Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  120 bits (302), Expect = 5e-32
 Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 20/333 (6%)

Query: 42  VSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLD 101
           + V V    E  +   V  VG + A+    LS   +  +  + F +G KV  GQ + + D
Sbjct: 58  IPVTVEAVKEASFADVVKEVGKINAIDSAILSFNASEKISAIHFSNGDKVTKGQVIAEQD 117

Query: 102 SAVESALLETAQADLGLAQLDYGRGSQLVGSQ--AISKGEFDRLSAQLQKNKATVNQLKA 159
           +    A L+ A++ L LA+    R   L+  +  A++K + D L   +    A   Q +A
Sbjct: 118 NTKAKADLDKAKSTLALAKTKLERIEDLLIKEPFALAKQDVDELRENVNLADADFRQKQA 177

Query: 160 SLAKKHIVAPFGGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQP 219
           ++    I APF G +      +G  +A+GT + TL  L+ + V + I +H   K   GQ 
Sbjct: 178 TMNDYLIKAPFDGQLTSFSQSIGSQIAAGTALVTLYSLNPVEVRYAISQHDFGKAQKGQG 237

Query: 220 VQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPNPA 279
           V V V AY  + F G+++ + P V+ S+  V V A L N E KL PGMF  +        
Sbjct: 238 VNVTVEAYANKVFKGTVNYVAPAVDESSGRVEVHAALDNSEFKLAPGMFANIKQFYSQGV 297

Query: 280 PQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGER-RGGLV 338
             ++VP+ +I        V+ V                     A ++ ++  +    G  
Sbjct: 298 ACLLVPQNSIIANNDERFVWLVRGNN-----------------AVKQIIKLAQNTNDGYT 340

Query: 339 LVSKGLKAGEQVVSAGQLKLDNGTPIAISPDKN 371
           +V++GL  G+ VV  G   L + + I +  DK+
Sbjct: 341 VVTEGLAKGDLVVKTGMQNLKSDSQINVIDDKS 373