Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  273 bits (697), Expect = 2e-77
 Identities = 213/652 (32%), Positives = 334/652 (51%), Gaps = 52/652 (7%)

Query: 78  VVTALADQVKDLRALAAKRALEPGALREELNQSLKTTFERNSKVLGIWLSFEPNGLDGKD 137
           VV A+A     L A A  +  E  + R   ++S + T + ++K +G W   +   L G  
Sbjct: 23  VVVAIAVTAAALVA-AGYQTFEKDSWRAIESES-RNTLQAHAKGIGDWFLGKQLALKGLR 80

Query: 138 SEFVDDKA-------RVSNEKGRFS-SYWSRAGGEGLNTIMVEDDLTKTTPNLSGTPYNI 189
            E   +         R + + G F  SY+    GE          + +  P+L+   Y+ 
Sbjct: 81  EEIERNPQLELVPHLRQTLQSGSFGLSYYGNEQGE----------MFRQDPSLNTADYDP 130

Query: 190 ----WYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNTLQA 245
               WY   +   K    +PY       Q L+ T++ P+   G +IGV   ++AL+ L  
Sbjct: 131 RVRGWYKEAKAAGKPITTEPYVSVTM--QTLVVTLAEPVRYQGQLIGVAASNLALDKL-- 186

Query: 246 VTDAAQKELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASDSPM 305
           + D    E+  G  +  +++  G I A   Q  I+  T         +E+   L      
Sbjct: 187 IKDVLAIEV-PGKGYAILVNQKGKIVAHPTQDLILKPT---------EEMSAQLTISKLN 236

Query: 306 IREQDHTIRAVYPVKPIADAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKALLVG 365
           I  +DH++  +       D +     V +   V   D L +  V+DK      L  +L+ 
Sbjct: 237 IAAKDHSLFQLS-----MDGRD---KVLMAEEVANTDWLLVM-VMDKGVLEQPLNDMLMV 287

Query: 366 AAAALLGLLLIW--LTATGVTRPIN---NVAAMLKDIASGDGDLTQRLAYAKKDELGELA 420
                LG+LL+   LT+  V R +N   N+A  L DIA GDGDLT+RL    +DE+G LA
Sbjct: 288 QIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLA 347

Query: 421 NWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMS 480
           + FN+F+D+L   +  +++        AD ++A A Q S+ ++ Q  EI  VATA  EM+
Sbjct: 348 DKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMA 407

Query: 481 ATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSE 540
           +   ++A++A N A  A  + Q   +G + ++QS + I  LA+E++ AV  +  L V++ 
Sbjct: 408 SATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHAN 467

Query: 541 QIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRL 600
           +I ++L  IR IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L++RT  S EEI+ 
Sbjct: 468 EISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQT 527

Query: 601 VIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQ 660
            I  +Q  T   V+ M  S    +++   ++Q   +L  IS+A+  ISDM  QIASAAE+
Sbjct: 528 KIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEE 587

Query: 661 QSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712
           QS V  ++N N  ++R V++ L  +A +S   +  L+A+A +  K + +F++
Sbjct: 588 QSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639



 Score = 28.9 bits (63), Expect = 8e-04
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 4   TLSIRLKIVLLSGLCLLGVIALIISINLYETNQNDQLISDSSSRMLTSSVQSLLQ----- 58
           T  I+ KI  L  +    V  +  S  L ET+  D   + +S + ++ ++Q +       
Sbjct: 522 TEEIQTKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQI 581

Query: 59  SKAGEQAVLLQKTFGENLLVVTALADQVKDLRALAAKRALEPGALREELNQSL 111
           + A E+  L+      N   V  ++DQ+ +    + ++A    A+ +ELN+ +
Sbjct: 582 ASAAEEQSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEI 634