Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 770 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  252 bits (644), Expect = 4e-71
 Identities = 156/415 (37%), Positives = 232/415 (55%), Gaps = 10/415 (2%)

Query: 299 LASDSPMIREQDH-TIRAVYPVKPI-ADAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAA 356
           L  +S ++ E  H +++ +    P+ A    W +V  +  +  LAD  KL D L      
Sbjct: 363 LRGESGLMMESTHASVQLLSAYTPLDALGLRWALVTEMQADEALADIAKLSDEL------ 416

Query: 357 GTLKALLVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDEL 416
             +K L+     A++  L  W+   G+++PI +  + ++ + S D DLT RL+    DE+
Sbjct: 417 -IMKVLIAIVIGAVIATLAAWMVGNGISKPIRDSISQIQRM-SRDNDLTVRLSEQGSDEI 474

Query: 417 GELANWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATAS 476
            +LA   NR L  LQ TI Q   +  +        +     T   +  Q    D V TA 
Sbjct: 475 RQLAQALNRMLSHLQDTICQFAHTTDKLNSHTQTITHNMTGTRNSVSEQHERTDSVVTAV 534

Query: 477 NEMSATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALA 536
           NEMSA+  +V+  A  AA+  + A+Q    G+S+  +  RD+TS+ ++++ AV  +  L 
Sbjct: 535 NEMSASITEVSEFAQRAATFVQEANQKGHGGVSVGNELARDMTSINQQMASAVEAIARLN 594

Query: 537 VNSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVE 596
             S+ I SVL+VI++IAEQTNLLALNAAIEAARAGE GRGFAVVADEVRNLA +TQ S E
Sbjct: 595 HESQSIASVLDVIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAAKTQTSTE 654

Query: 597 EIRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIAS 656
           EIR  I+R+Q  T+ VV  +  + +         H     L +I D +  +++MN+QIA+
Sbjct: 655 EIRTKIDRLQKETQSVVNCIEEANNTVVRGVATCHSNTDMLKQIVDMLNELNEMNIQIAT 714

Query: 657 AAEQQSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFR 711
           A EQQ  V EE+N N+++I  V+ ++T Q  E  AI ++L+  A +  K M QFR
Sbjct: 715 ATEQQRGVTEEINANITSISDVSASVTVQVGEVNAIVNELSDEAMELSKRMGQFR 769