Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  278 bits (711), Expect = 6e-79
 Identities = 185/529 (34%), Positives = 292/529 (55%), Gaps = 36/529 (6%)

Query: 190 WYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNTLQAVTDA 249
           WY   ++  K+ +  PYAD  +G+ ++     +     G  +G +  D++L  L  + + 
Sbjct: 126 WYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVN- 184

Query: 250 AQKELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASDSPMIREQ 309
            + +LF+ A ++ I+S  G   A   + E  GK + + +G E K  V             
Sbjct: 185 -EVKLFD-AGYVFIVSEDGTTIAHP-KKEFNGKPMSEFLG-ESKINVD------------ 228

Query: 310 DHTIRAVYPVKPIA------DAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKALL 363
             T + +   KP A      + + W V V +   +  A        LD+ + +     L+
Sbjct: 229 --THQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYA-------ALDELRRS----TLI 275

Query: 364 VGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWF 423
               A ++ + ++      + +P++ +   ++++ASG+GDLTQRL+    +E  +LA  F
Sbjct: 276 FTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGF 335

Query: 424 NRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSATA 483
           N F + LQ  + Q K    E    ++ +S   +Q++E M+ Q  E++Q+ATA +EM+ T+
Sbjct: 336 NTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTS 395

Query: 484 HDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIG 543
            DVAN+A  AASAA+ AD +A  G  ++ ++T+ I +L+  +  AV +V+ L   +  I 
Sbjct: 396 SDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIE 455

Query: 544 SVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIE 603
           +VL+VI  IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR LA+RTQ S  EIR +IE
Sbjct: 456 TVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIE 515

Query: 604 RIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSA 663
           ++QSG   V   M  S+  A S   Q   A +AL KI  A+  ISDMN+QIASAAE+QS 
Sbjct: 516 KLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSL 575

Query: 664 VAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712
           VAEE+N N   I+ +++ +   A E+            +Q  ++++F+V
Sbjct: 576 VAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624