Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  268 bits (686), Expect = 5e-76
 Identities = 196/582 (33%), Positives = 305/582 (52%), Gaps = 33/582 (5%)

Query: 133 LDGKDSEFVDDKARVSNEKGRFSSYWSRAGGEGLNTIMVEDDLTKTTPNLSGTPYNI-WY 191
           LD  +  F        N KG F +     G E   T++  DD  +  PN    P    WY
Sbjct: 73  LDPTNKAFAKSVLESPNLKGSFLAIG--LGYESDATVVENDDGWE--PNADYDPRKRPWY 128

Query: 192 TCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNTLQAVTDAAQ 251
              +  RK+ + +PY D ++ K+++++ I  P+    N +G +  D+ L  L  + ++  
Sbjct: 129 VDAKRERKLVVTEPYVD-ISTKKIIIS-IGTPVYQQSNFVGAMFYDVELTQLAQLVNSVN 186

Query: 252 KELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASDSPMIREQDH 311
             LF+ A +L I +  G+  A         K        + KE  Q +  D         
Sbjct: 187 --LFD-AGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRIELDGKY------ 237

Query: 312 TIRAVYPVK-PIADAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKALLVGAAAAL 370
                Y VK     ++SW +   +  ++  A    L+          +L   ++G   ++
Sbjct: 238 -----YLVKFAQVPSESWYIGAVVDESIAFAMVDDLRH--------SSLIYTVIGVLLSI 284

Query: 371 LGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWFNRFLDKL 430
           +GL  +      + +P+  ++  ++D+ASG GDLT+RL      E   LA  FN F + L
Sbjct: 285 IGLSFLIKV---LMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETL 341

Query: 431 QPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSATAHDVANSA 490
           Q  I  +K    E     +Q+   A +++  M  Q +E++Q+ATA +EM+ TA +VAN+A
Sbjct: 342 QKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNA 401

Query: 491 SNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIGSVLEVIR 550
             AA+AA  AD+++++G  ++  +TR I +L+  + +AV EV+ L V +  I ++L+VI 
Sbjct: 402 QGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVIN 461

Query: 551 SIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQSGTR 610
            IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR LA+RTQ S  EIR +IE++QSG  
Sbjct: 462 DIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGAS 521

Query: 611 GVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSAVAEEVNR 670
            V A M+ S+  A     +   A ++L +I  A+  ISDMN+QIASAAE+QS VAEE+N 
Sbjct: 522 AVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINT 581

Query: 671 NVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712
           N   I+ ++  +   A  ++           +Q KL++ F V
Sbjct: 582 NTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623