Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  394 bits (1012), Expect = e-114
 Identities = 240/710 (33%), Positives = 380/710 (53%), Gaps = 10/710 (1%)

Query: 5   LSIRLKIVLLSGLCLLGVIALIISINLYETNQNDQLISDSSSRMLTSSVQSLLQSKAGEQ 64
           +S++ KI LL+GLCL+     +I  ++Y    + Q     SS  +    Q LLQ+ A   
Sbjct: 4   ISVQWKITLLAGLCLVFTSLALIGFSIYNARASQQTAKLQSSESVIDKSQQLLQTGALLN 63

Query: 65  AVLLQKTFGENLLVVTALADQVKDLRALAAKRALEPGALREELNQSLKTTFERNSKVLGI 124
           A  + +   E +     LA     L+  + +   E   LR  L++ ++ +      + G 
Sbjct: 64  ATEISEYLSEAIYRAEMLAANALFLKNNSEENFGESEVLRTSLDEMVRKSVLGFDTIEGA 123

Query: 125 WLSFEPNGLDGKDSEFVDDKARVSNEKGRFSSYWSRA--GGEGLNTIMVEDDLTKTTPNL 182
           +L F PN LD +DS +V+     SN+ G+F++YW++A  G   ++ ++ +  LT+ +   
Sbjct: 124 YLVFRPNMLDSEDSNYVNADYVGSNDIGQFAAYWTKAANGQNVISRVLTQAQLTEESNKE 183

Query: 183 SGTPYNIWYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNT 242
                   + CP +    C+  P   E    + L T++S+P+++DG  IG  GID+ L  
Sbjct: 184 R-------FVCPIEQASPCITSPRMVEFETGRYLATSLSVPILIDGVAIGFYGIDLTLAP 236

Query: 243 LQAVTDAAQKELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASD 302
           L  +T  +   LF+G   + I+S    + AS      +G+T      +       L A  
Sbjct: 237 LIGITQKSDNNLFDGQGKVSIVSENNALVASDAAFLTLGETFQSENLSRSTVSSLLQAGQ 296

Query: 303 SPMIREQDHTIRAVYPVKPIADAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKAL 362
                 +D     V+    +A+ ++WG++  +PR  ++ D  +L  +L +    G    L
Sbjct: 297 VNTQWSEDGQWLVVFAPIKVAN-QNWGIIFEMPRQSVMQDAEQLDILLTEQLERGIRSEL 355

Query: 363 LVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANW 422
           +VG    ++GLL++ L A  + RPI  VA  L+DI+SG+GDLTQRL     DE+G+LA  
Sbjct: 356 MVGTLMVVVGLLVVTLMAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIGQLAQG 415

Query: 423 FNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSAT 482
           FN F+DKLQP I ++  +  +   T +Q  +    T    + QF+E+D VATA+ EM+ T
Sbjct: 416 FNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQT 475

Query: 483 AHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQI 542
           +  V  +A  A +AA  A ++A+ G  +I  S   +  L + ++ AV  VE LA N+  I
Sbjct: 476 SAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGI 535

Query: 543 GSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVI 602
             +L VI  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ SV EIR VI
Sbjct: 536 IEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVI 595

Query: 603 ERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQS 662
            +++ GT+ VV  +  S   AQ+ A Q+  A   L ++  A+  I++M+ QI  AA+ Q 
Sbjct: 596 NKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQAAQDQQ 655

Query: 663 AVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712
            V+ +V ++V  IR ++  +  +   S  +  Q+  L+ +Q  L+ QF+V
Sbjct: 656 TVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFKV 705