Pairwise Alignments
Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417
Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a
Score = 271 bits (694), Expect = 6e-77
Identities = 157/372 (42%), Positives = 232/372 (62%), Gaps = 3/372 (0%)
Query: 342 DTLKLQDVLDKAQAAGTLKALLVGAAAAL-LGLLLIWLTATGVTRPINNVAAMLKDIASG 400
D + Q+ A +A +++ ++ A A+ LG+L W+ +T P+ +++ +ASG
Sbjct: 269 DLITRQNKSRDADSAKSVQMIIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASG 328
Query: 401 DGDLTQRLAYAKKDELGELANWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSE 460
D L++ L +KDELG+L R L+ + I+ +T+ A++ SA+ QTS
Sbjct: 329 D--LSRNLNVDRKDELGKLQATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSA 386
Query: 461 GMQVQFREIDQVATASNEMSATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITS 520
G+ Q E DQVATA +EM+AT +VA +A A+ AA AD+ AR+G ++ ++ I
Sbjct: 387 GVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIER 446
Query: 521 LAEEVSKAVGEVEALAVNSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVV 580
LA V + + AL S++IGSVL+VI+S+AEQTNLLALNAAIEAARAGE+GRGFAVV
Sbjct: 447 LASAVGNSSEAMGALKQESDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVV 506
Query: 581 ADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKI 640
ADEVR+LA+RTQ S EEI +I R+QSGT+ M SS+ + S+ +A +L I
Sbjct: 507 ADEVRSLAQRTQKSTEEIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANI 566
Query: 641 SDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALA 700
+ V+ I MN QIA+AAE+QSA AEE+NR++ +R V+E + + E+AA S +L L
Sbjct: 567 TKTVSSIQAMNQQIAAAAEEQSATAEEINRSIINVRDVSEQTSAASEETAASSVELARLG 626
Query: 701 SQQMKLMDQFRV 712
+ L+ +F V
Sbjct: 627 NHLQVLVSRFTV 638
Score = 35.0 bits (79), Expect = 1e-05
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 38/261 (14%)
Query: 449 DQSSAIARQTSEGMQVQFREIDQVATASNEMSATAHDVANSASNAASAARGADQSAREGM 508
D+ +AIA +Q++ + + E +A + A AR +S E +
Sbjct: 48 DRVTAIAEVNELTLQLRINRMSYEVLYNAETAAKVRSTLDELDAALQTARNLLRSP-ENL 106
Query: 509 SIIE---QSTRDITSLAEEVSKAVGEVEA----LAVNSEQ-IGSVLEVIRSIAEQTNLLA 560
+++ Q+TRD E++SKA+ EA + N+++ + + + ++ N+LA
Sbjct: 107 QLLDVQIQATRDYRQSFEDMSKAIDTREASRSQMGENADKAVDQANRIEAELLKEDNILA 166
Query: 561 LNA------AIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVA 614
N I+ AR G ++ D ++ K D+V I + G ++
Sbjct: 167 FNGIVGVSKLIQQARFQVRGYTYSGRPDFEKDANKAIDDAVTGINTL--------AGDIS 218
Query: 615 TMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSA 674
+ +S Q Q+ AG ++ A+GK DA A ++A+ + VS
Sbjct: 219 STYSPMLQ-QAIAG-LNGYRAAVGKYRDA-------------QAASKAALDKMTTLGVSM 263
Query: 675 IRTVTETLTGQATESAAISSQ 695
+ T + +T Q A S++
Sbjct: 264 LATSNDLITRQNKSRDADSAK 284
Score = 28.1 bits (61), Expect = 0.001
Identities = 55/282 (19%), Positives = 115/282 (40%), Gaps = 24/282 (8%)
Query: 219 TISLPLMVDGNVIGVVGIDIALNTLQAVTD-------AAQKELFNGAAHLDILSSTGLIA 271
T+SL +V G GV I A L AVT+ + + E A + +++T
Sbjct: 353 TVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEV 412
Query: 272 ASSGQPEIVGKTLMDTVGAEGKEIV-QLLASDSPMIREQDHTIRAVYPVKPIADAKSWGV 330
A + + D +G+ +V + +A + ++ A+ +K +D K V
Sbjct: 413 ARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQESD-KIGSV 471
Query: 331 VVTLPRNVMLADTLKLQDVLDKAQA--AGTLKALLVGAAAALLGLLLIWLTATGVTRPIN 388
+ + + L L ++ A+A AG A++ +L A +
Sbjct: 472 LDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSL---------AQRTQKSTE 522
Query: 389 NVAAMLKDIASGDGDLTQRLAYAKKDELG--ELANWFNRFLDKLQPTIAQIKQSITEARG 446
+ A++ + SG T + +++ EL L + T++ I+ +
Sbjct: 523 EIEALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAA 582
Query: 447 TADQSSAIARQTSEGMQVQFREI-DQVATASNEMSATAHDVA 487
A++ SA A + + + + R++ +Q + AS E +A++ ++A
Sbjct: 583 AAEEQSATAEEINRSI-INVRDVSEQTSAASEETAASSVELA 623
Score = 27.3 bits (59), Expect = 0.002
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 31 LYETNQNDQLISDSSSRMLTSSVQSLLQSKAGEQAVLLQKTFGENLLVVTALADQVKDLR 90
L Q + DSS + TSSV+ L + G +L +T ++ +
Sbjct: 531 LQSGTQQATTVMDSSRELSTSSVE-------------LTRRAGGSLANITKTVSSIQAMN 577
Query: 91 ALAAKRALEPGALREELNQSL 111
A A E A EE+N+S+
Sbjct: 578 QQIAAAAEEQSATAEEINRSI 598