Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (611), Expect = 2e-67
 Identities = 140/365 (38%), Positives = 213/365 (58%), Gaps = 6/365 (1%)

Query: 351 DKAQAAGTLKALLVGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRL-- 408
           + A     + +++VG +     +++ +L    +  PI  +     ++++G+  LT +L  
Sbjct: 185 ENAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGN--LTNKLNM 242

Query: 409 -AYAKKDELGELANWFNRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFR 467
            A+A+ DE G+LA  FN   D L   ++++  SI +    A++ S++A  +S  M+ Q  
Sbjct: 243 NAFAR-DEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQN 301

Query: 468 EIDQVATASNEMSATAHDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSK 527
           E++Q+ATA +EM AT  DVA + ++AA+AA  A  +A +G   +  S   I  +A  +  
Sbjct: 302 ELNQLATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEA 361

Query: 528 AVGEVEALAVNSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNL 587
               +  L  +S  IG VLEVI+ IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L
Sbjct: 362 TAVVIRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTL 421

Query: 588 AKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVI 647
           AKRTQDS   I  +I  +Q        TM  SQ        +  +A +++ KIS +V+ I
Sbjct: 422 AKRTQDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCI 481

Query: 648 SDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLM 707
           S MN+QIA+A E+Q AV+EE+NRNV+ I   +E +   A + A   + L+ LA+Q   ++
Sbjct: 482 SQMNIQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMV 541

Query: 708 DQFRV 712
            +F +
Sbjct: 542 KKFHI 546