Pairwise Alignments

Query, 854 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score =  151 bits (381), Expect = 1e-40
 Identities = 182/760 (23%), Positives = 293/760 (38%), Gaps = 116/760 (15%)

Query: 126 QQVTISATRNEQNINSVPSTVTVQEREALDRQNVNTIRELVRYEPNVSVGGAGGRSSNSG 185
           ++V ++A R EQ ++ V  +V V E E L++Q    + + +  EP VSV G  GR  N  
Sbjct: 29  EEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTELYDALNQEPGVSVTGGAGRPQN-- 86

Query: 186 YNIRGIDGDRILTQVDGVEVPDNF----FNGPYAKTRRNYVDPEIVKRVEILRGPASALY 241
             IRG+ G+RI    DG++  D +     N  Y    RN      VK++++++G +S LY
Sbjct: 87  ITIRGMTGNRIAIVRDGIQSADGYGAADINDKYG---RNTFSLSNVKQIQVVKGASSTLY 143

Query: 242 GSSAIGGAVSYFTLDPDDIIKPGQDVGARLKTGYSSADESWLTSGTVAGRVQDVDGLLHL 301
           GS AIGG V   +  P+D +   +D        YS     +  +  +A R  D + LL +
Sbjct: 144 GSGAIGGVVIIESKAPEDYLYH-RDYYVDAALTYSGISNRYQGNHALAMRHGDGEALLTI 202

Query: 302 SQRNGHEMESYDG---NNATGLARTGANPEDARTTNVLAKLGWNYGDD--NRLGLTYEKY 356
               G E  +++    N        G +        +  K    Y DD   R   T    
Sbjct: 203 DYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLKTHLEYFDDYAKRREGTSSIQ 262

Query: 357 KDD-----------RDVNLKNAVGGPFTGGRGF------NFYRARSGNDTITRERFAIEN 399
           KDD           R      +VG  +T    +       FY   + N T T    A   
Sbjct: 263 KDDKWDLVSFYEYQRSQTRLASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMA--- 319

Query: 400 RFALDSPIADQIKTSLNYQIAKTDQSTAEIYQPSRRVLRTRETLYEEKQWVFDAQLDKAF 459
                                  D+S A I    RR LR      E      +AQ  K +
Sbjct: 320 ----------------------NDRSGAGILS-YRRELRDEGFNDEALGATLNAQ--KEW 354

Query: 460 SWGDTDHQVTYGTTLK---QQKVTGSREGAATCLAVGGGCTAIGAPSPTASDSVKKASDF 516
             G+  HQ  YG ++     Q+    R                     ++ D ++    F
Sbjct: 355 QQGEWLHQFAYGMSVDGHDYQRPKSIRR------------------MESSGDDLQADEPF 396

Query: 517 PDPTINTYSLFAQDQITWDKWTFLPAVRYDYTQLKPKLTEEFLNTVDPTRIYAHSDKEKT 576
                  + ++ QD +    WT    +R+D  +L PK T+         RI+ +      
Sbjct: 397 APAREYRFGVYGQDNLLLGDWTLAAGLRFDAQKLSPKNTD---------RIHGYKVVTMG 447

Query: 577 WHRVTPKFGLTYALTDQYTWFGQYAEGFRTPSAKALYGRFENLQQGYT---VEPNPNLKP 633
               +P   ++Y    ++  +  Y  GFR PS    YG  ++     T   ++PN  L+ 
Sbjct: 448 SSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRA 507

Query: 634 ESSKGVETGIRGHFDSGSFDIAVFYNKYRNFIDEDA----SVAGGTAQQFEANNIKHATI 689
           E+S   E G +       F +AVFY+ + NFID       +  G   QQ++  NI     
Sbjct: 508 ETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQ--NIAGVKT 565

Query: 690 KGIEAKGRLNLDAFGAPQGLYTQGSVGYTYGRNDDNGEPLNSVNPLKGVFGLGYDKDNYG 749
            G E      LD          +  +GY  G++ +N + + ++ PL+G   L Y ++ + 
Sbjct: 566 YGAEMSVMHRLD-----DRWSVENKLGYVDGKDGEN-QYVRTLTPLEGSVQLNYQRERWD 619

Query: 750 GLLSWTLVKKQDRVDSTTFHAPDGSTTAPFKTPGFGVLDLTAFYKVTNDVTVNGGLYNLT 809
                       RV + T     G  T    T G+   D+   Y+    ++ +  + NL 
Sbjct: 620 AYSRLNWASAMSRVPTCT--TEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLL 677

Query: 810 DKKYWNWDDVRSYDGVGEAGVTSPANLDRLTQPGRNVAIN 849
           D++Y  + DV        AGVT P++    T+PGR   ++
Sbjct: 678 DREYTRYQDV--------AGVT-PSDTLYSTEPGRYFTVH 708