Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 164 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Pseudomonas fluorescens FW300-N2E2

 Score = 57.8 bits (138), Expect = 9e-14
 Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 6/151 (3%)

Query: 14  RVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLE-PFVYQTARNLALDHLRA 72
           R++L++   R+    S AED++Q+ + R+  A         +  +++Q  RNLA+DH R 
Sbjct: 4   RLILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRNLAIDHYRK 63

Query: 73  RRIQAR-TLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQRIFILSR 131
           + ++ + +  E   L+V+   A+P ++  + +  E + +AL+    +L +R +  F + R
Sbjct: 64  QALEQKYSGPEEEGLNVVIQGASPETSHINFSTLEHIADALT----ELPSRTRYAFEMYR 119

Query: 132 LHGCSYQEIADQLGVSLSTVQKELKLIMAIC 162
           LHG   ++IA +LGVS + V   ++  +  C
Sbjct: 120 LHGVPQKDIAKELGVSPTLVNFMIRDALVHC 150