Pairwise Alignments

Query, 244 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 240 a.a., two-component system response regulator OmpR from Vibrio cholerae E7946 ATCC 55056

 Score =  183 bits (465), Expect = 2e-51
 Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 7/243 (2%)

Query: 3   VISKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGTGFRQAMNEAPCDLVILDVMLPDE 62
           V +  +L+VDDD  +R LL+ YLS  GFQVR V +G    + +      L++LD+MLP E
Sbjct: 2   VENHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGE 61

Query: 63  DGFSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKAL 122
           DG S+CR +R       +PI+MLTA  DE DR++GLE+GADDY+ KPF+PREL ARIKA+
Sbjct: 62  DGLSICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAV 119

Query: 123 LRRCQFGQERSSGGE--VLVFDEWRLDMISHRLFHVDGEEVI-LSGADFALLKLFLDHPQ 179
           LRR       +   E  ++ F E+RL++ +  +F   GEE + L+  +FA+LK  + + +
Sbjct: 120 LRRQVIEAPGAPSAEETIIEFGEFRLNLGTREMFR--GEEAMPLTSGEFAVLKALVTNAR 177

Query: 180 QILDRDTIGNATRGRDLMPLDRIVDMAVSRLRQRLRDTEKPPRLIRTVRGSGYQLAASVV 239
           + L RD + N  RGR+   ++R +D+ +SRLR+ L      PR I+TV G GY       
Sbjct: 178 EPLSRDKLMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237

Query: 240 AGN 242
           A N
Sbjct: 238 AAN 240