Pairwise Alignments

Query, 588 a.a., cytochrome C biogenesis protein CcmE from Pseudomonas simiae WCS417

Subject, 607 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (701), Expect = 7e-78
 Identities = 178/562 (31%), Positives = 299/562 (53%), Gaps = 28/562 (4%)

Query: 43  RANQQLALYANSLHTLIERYRALPAVLALDSEMINALKGPLDTATQDLLNRKLERINGAA 102
           ++N Q+    + L   + RY ++P VL+ +  + +AL    D  T   LNR LE I    
Sbjct: 46  QSNAQMKELLSFLSGSLSRYESIPHVLSTNPLLASALLKQDDPDTITPLNRYLEEIQSIT 105

Query: 103 QSSTLELMDRTGLAVAASNWNLPSSYVGHNYAFRPYFSQTLSQGTGRFYAVGVTTGIPGY 162
           ++  + L++  G A+AASNW    S++G NYAFRPYF   +    GR++AVG ++   GY
Sbjct: 106 EALDIYLVNIDGDAIAASNWQQSYSFIGKNYAFRPYFKDAIEGKMGRYFAVGTSSNKRGY 165

Query: 163 FLSSAVVDE---------HEQFLGAMVVKLEFPELERE---WAQGNDL-LLVSDARGIVF 209
           + S  +              + LGA+VVK++  E+E++    A+G++    +SD   I+F
Sbjct: 166 YFSYPIYSHGYPVTPSQGEAKVLGAIVVKVDVTEIEQQSTGMARGSNYEFAISDPDHIIF 225

Query: 210 IANQPGWRYRNLRPLTASDLAELKATRQYDKKHLQ--ALETSTLQRFDENSHLMRVNGPD 267
           ++++P WR   L P+T      ++++R+Y  + +   A+E         +  + ++    
Sbjct: 226 LSSRPEWRLTALTPVTHQLKQRIESSRRYANREISPLAIEPPFAPSLAADYQIYQIGDDK 285

Query: 268 GSANYIWESLPLKAEGWTLHLLRKPQFAFEDQRNAGLAAAGSWLALVFLVLFLTQRWRLA 327
             A ++  +  +   GW +H+L      +       L     +L     +LF  ++ +  
Sbjct: 286 RGAEFMDNAAYMSDAGWQVHILSPMTPIYRSLPPLLLLYGALYLLCALALLFAIEKRKNT 345

Query: 328 RLRQRSREELEQLVEERTQALRT-------AQDGLVQSAKLAALGQMSAALAHEINQPLT 380
           R  Q++ E+LEQ V+ERTQAL T       AQD L+Q+AKL  +G +SA++ HEINQPL 
Sbjct: 346 RRMQQAHEQLEQRVKERTQALETSHQQLKEAQDELIQAAKLTVIGSLSASINHEINQPLA 405

Query: 381 AQRMQLATLRLLLDHGRVDDAYQALTPLDDMLTRMAALTGHLKTFARKSPSGLRERLDLA 440
           A R      + LL   + DD    +  + ++  R+AA+    K+F RKS  G  + + +A
Sbjct: 406 AIRSYAQNTQTLLSRAKWDDVSSNIMTIIELTDRLAAIVSQFKSFTRKS-QGNDKAISVA 464

Query: 441 TVVDQSLHLLDARLRDESIGVVLDLTR-PAWVRGDAIRLEQVLINLLRNALDAMVDKPRK 499
             +  +L ++   +  + I +VL+ T     + GD IRL+QVLINL+ NA+ AM     K
Sbjct: 465 QCIRDALTIVQPEVDKQGIDLVLNNTECQTLLWGDPIRLQQVLINLMSNAMVAMRANNPK 524

Query: 500 RLEIRLHADEQLWQLTVSDSGGGIAEEHLNSVFDPFFTTKPVGDGLGLGLAVSYAIVHEL 559
           +L I +    +L ++T+ D+G GI E  +  +FDP++T+     GLGLGL++S  IV  +
Sbjct: 525 QLIIGVVVSNRL-EITIEDTGTGIDESQMQKIFDPYYTSS--RQGLGLGLSISRRIVEAM 581

Query: 560 GGRLIASNRGD-GAVFTLTLPI 580
            G++  +NR   GA+F +TLPI
Sbjct: 582 QGKISVANRQQGGAIFQITLPI 603