Pairwise Alignments

Query, 326 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 320 a.a., conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 84/327 (25%), Positives = 154/327 (47%), Gaps = 16/327 (4%)

Query: 1   MKQSLFESRHQLQWQAFANHLQQLEQGKATASELADFPQQYRRLCQHLALAQERGYSSYL 60
           MK+  F  R+  +W+     ++Q      +  +LAD    Y  L   LA AQ    +S +
Sbjct: 1   MKEVTFIRRNIEKWKGTEKVVEQA--ANLSPDQLAD---AYTELTADLAFAQTHFPTSRI 55

Query: 61  VDPLQQLALRGHQQLYRHRSQLTANVLGFVLADFPRLVREQWRFVLIASLLFFGSLVGIA 120
              L  LA   H ++YR + +    ++ F   + P+ + +  R +LI+ ++F  S +  A
Sbjct: 56  TIYLNNLASALHNEIYRSKREKWTRIITFWTREVPQTMHDAQRELLISFIIFAVSALIGA 115

Query: 121 LLVYLFPDLIYSIVSPQQVAEMQGMYDPDASRLGRTAERASSENWMMFGYYVMHNIGIAF 180
           +      + +  I+  Q V     M   + +R    A    S    MF    ++NI ++F
Sbjct: 116 VSAANDQEFVRLIMGNQYV----DMTLDNIARGEPMAVYNGSPEAPMFLGITINNIKVSF 171

Query: 181 QTFAAGLLFGLGSVFFLIFNGLVIGAVSGHLTEIGYGQTFWSFVIG---HGAFELTAIAL 237
             FAAG+L   G+   L+ NG+++G+      +       W   +    HG  E+ AI +
Sbjct: 172 LCFAAGILTSFGTGLILLQNGIMLGSFQMFFYQ---HDLLWESALAVWLHGTLEIWAIIV 228

Query: 238 AGAAGLQLGWALIAPGQLTRGESLRLAARKSVQMLCGVMIFLLIAAFIEAYWSSTTLIAP 297
           AGAAGL LG + + PG  +R ES R  A++ ++++ G +   ++A FIE + +  T +  
Sbjct: 229 AGAAGLALGNSWLFPGTYSRLESFRRGAKRGLKIVIGTVPVFIMAGFIEGFITRHTELPD 288

Query: 298 WVKY-LVGAALWMLVTAYLGLAGRNRH 323
            ++  ++  +L  ++  Y+ L  R +H
Sbjct: 289 MLRLGIILTSLAFIIFYYIYLPNRKKH 315