Pairwise Alignments

Query, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  245 bits (626), Expect = 4e-69
 Identities = 173/631 (27%), Positives = 296/631 (46%), Gaps = 22/631 (3%)

Query: 11  ILLAASLIVIAAFALFTLYNDYLQRNAIRDDLNNYLQEMGDVTASNIQTWLGGRIALVEN 70
           IL+  SL+V+    + +L  + +      D L    Q   +   S ++ W+  R   V  
Sbjct: 22  ILVTISLMVLGTINMLSLKREMI------DSLTTETQNKLNYHVSELEFWVKSRYEAVSR 75

Query: 71  AAQNIAINPEPSAVASLLEQKTLTSSFMATYV----GDSKGAFTIRPDTKMPDG-FDPRV 125
            A      PE S   +L + + L  +   T V     D +   ++  +  +    F    
Sbjct: 76  GAN--LFTPELSDTDNLNKVRLLAEAAQITNVIAAYEDGRSYMSMDKEGGVTTNRFKFTD 133

Query: 126 RPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQTLVDNIGA 185
           R WY+ A+S     LTE Y D  TGK +IS  +P     Q +G + GD  L  ++  +  
Sbjct: 134 RDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDIITQVSN 193

Query: 186 LNFGGMGYAFLVSADGKVLVHPDKNLVMKTLADVYPKNTPKISADFSEVEANGKDNIVTF 245
           + F G G A L   +       D N + +T + V P +  ++ A F   E+         
Sbjct: 194 MRFAG-GAATLTDKNAVFFASDDPNDIGRTPSQVSP-SFREMEAGFHRQESGHLSFPYLG 251

Query: 246 IPIKGL-------PSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIR 298
           I   G          + W L + VDK  + A +     +A+    + + I + ++  +I 
Sbjct: 252 IEFDGYYKRVNLTDDMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGVIIFIIN 311

Query: 299 ILMQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSAT 358
            + +PL  +  A+ D+A G GDLTRRL +  +D+   +   FNRF   +   + ++S AT
Sbjct: 312 QIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMMLQISDAT 371

Query: 359 EHVNEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQASHQASDAR 418
           + ++    ++   +  +       ++ T+ V  AI Q+  +A+ +A +  Q++     A 
Sbjct: 372 QIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQITEAAS 431

Query: 419 HLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLLAL 478
             A+    +V   +  +  L + +   S +I  +N     I ++L VI +IS+QTNLLAL
Sbjct: 432 KEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQTNLLAL 491

Query: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGESQR 538
           NAAIEAARAGE GRGFAVVADEVR LA RTQ S  ++  M+ +L  G    V  M  +++
Sbjct: 492 NAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGAMERTKQ 551

Query: 539 HSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQE 598
               + D  +     LN ++  + +ID ++  +A ATE+Q++V   ++ ++  I  + + 
Sbjct: 552 QCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSIREIVES 611

Query: 599 GVENLQSTLRACADLEQQAARLKQLVGSFRI 629
            V + + T+ A   L      L+QLVG F++
Sbjct: 612 LVVSGRQTVGATESLSHSNHELEQLVGKFKL 642