Pairwise Alignments

Query, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  306 bits (784), Expect = 2e-87
 Identities = 193/631 (30%), Positives = 322/631 (51%), Gaps = 12/631 (1%)

Query: 5   LRFSHKILLAA-SLIVIAAFALFTLYNDYLQRNAIRDDLNNYLQEMGDVTASNIQTWLGG 63
           L   HK++ A+ S +V+ A AL      +   + ++   +N +    D  +S     +  
Sbjct: 7   LTLKHKLIGASLSAVVVMATAL-----TWFSASQLQQQTSNAVYTRADAISSTAAKGISD 61

Query: 64  RIALVENAAQNIAINPEPSAVASLLEQKTLTSSFMATYVGDSKGA-FTIRPDTKMPDGFD 122
            I++ ++ +     + E   V   L+Q      F   + G + GA +   P+    D +D
Sbjct: 62  WISIRKSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRAD-YD 120

Query: 123 PRVRPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQTLVDN 182
           PR RPWYK A S+    +T  Y DA TG L++++A P        GVVG D+ +  L+ +
Sbjct: 121 PRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIAD 180

Query: 183 IGALNFGGMGYAFLVSA-DGKVLVHPDKNLVMK---TLADVYPKNTPKISADFSEVEANG 238
           + +++ G      L+   +G  L HPDK+L++K   TL+      T + +A+  E+ A  
Sbjct: 181 VISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALK 240

Query: 239 KDNIVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIR 298
            + +  F     +P   W   + +D D  +A  SE  T  +    +  VI++ ++  L+ 
Sbjct: 241 LNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVS 300

Query: 299 ILMQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSAT 358
            L + L  +++A+++IA G+ DLT+RL  ++ DE G L + FN FV  +HT + ++S  +
Sbjct: 301 FLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVS 360

Query: 359 EHVNEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQASHQASDAR 418
             + + +    + +         Q +  N VA AIN++ AA QEIA NA   +  A +A 
Sbjct: 361 AALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAV 420

Query: 419 HLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLLAL 478
                G   V +  +++  L+  +  ++  I+ L +    I  IL  I +I++QTNLLAL
Sbjct: 421 TACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLAL 480

Query: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGESQR 538
           NAAIEAARAGE GRGFAVVADEVR L+ RT  S +++Q+MIE LQ    ++V  M +S+R
Sbjct: 481 NAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRR 540

Query: 539 HSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQE 598
            +  SVD AN A   L  + + +  I  M   +A+A EEQ SV   I  +   I  ++ +
Sbjct: 541 LADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSND 600

Query: 599 GVENLQSTLRACADLEQQAARLKQLVGSFRI 629
             +   S     A+L + +  L+Q +  F++
Sbjct: 601 LAQEAHSAAEQAAELSELSHELEQEIRRFKL 631