Pairwise Alignments

Query, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  285 bits (730), Expect = 3e-81
 Identities = 188/634 (29%), Positives = 331/634 (52%), Gaps = 17/634 (2%)

Query: 4   NLRFSHKILLAASLIVIAAFALFTLYNDYLQ-RNAIRDDLNNYLQEMGDVTASNIQTWLG 62
           N+ F  K++  +S I++   A F ++  Y   +  +   + + + E+ + T   +   L 
Sbjct: 2   NVGFVKKLIFISSFILLVTVA-FVVWEGYTTAKKEVSVVIEDGINEIINKTERFVSLKLE 60

Query: 63  GRIALVENAAQNIAIN-PEPSAVASLLEQKTLTSSFMATYVG-DSKGAFTIR-PDTKMPD 119
             I+L  +   +I++   +   +  ++    +  +F++T  G DS G      P+ +  D
Sbjct: 61  SDISLASSIVDSISLRISDEQYINDIINGNAIKKAFLSTGFGFDSNGKVIENDPNWEPED 120

Query: 120 GFDPRVRPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQS-IGVVGGDLSLQT 178
            +DPR R WY+ A+ +    +TEPY+D      ++S+++P      + IG +  D+ L  
Sbjct: 121 DYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPVADTMNNFIGAMYFDVDLSR 180

Query: 179 LVDNIGALNFGGMGYAFLVSADGKVLVHPDKNLVMKTLADVYPKNTPKISADFSEVEANG 238
           +  N+  +N    GY F+ S  GKV++H + + + K + D+Y  N  ++      +  NG
Sbjct: 181 IQKNVDDINLFEAGYVFITSNTGKVIIHSNTDELGKNVKDIY--NGFRLDKGKVVLSVNG 238

Query: 239 KDNIVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIR 298
            +  +   PI G    +W +   +D+  +   +++ +   +  + I +V    +L  ++R
Sbjct: 239 VNKWLYTSPILG---GDWFIIAVIDESIAMQSINKMKYELIFYSAIGLVFGGLILVFILR 295

Query: 299 ILMQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSAT 358
            LM PL  +  A++DIA G GDLT++L      EF  L   FN F E + + IR++ +  
Sbjct: 296 RLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSELALGFNSFTEMLGSQIRQLKTIA 355

Query: 359 EHVNEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQASHQASDAR 418
             V + A +  + +  S +  ++Q      +A A+N++   A E+A +A  A+  A +  
Sbjct: 356 SGVLDGAEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGE 415

Query: 419 HLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLLAL 478
             + +G  VV     A+ +LS  I +S  +++ L   T  I  +L+VI  I+ QTNLLAL
Sbjct: 416 SASLEGSSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLAL 475

Query: 479 NAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGESQR 538
           NAAIEAARAGE+GRGFAVVADEVR LA RTQ+S  Q+ ++IE+LQ GA+    +M ES+ 
Sbjct: 476 NAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTMQISEIIEQLQEGAKNVSRSMDESKL 535

Query: 539 HSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQE 598
            +   V+  N   E+++ V Q I  I  MN  +A+A EEQ+ V E IN +   I  L+  
Sbjct: 536 ETDIVVEKTNQVNEKISLVQQAIHRISDMNLQIASAAEEQSLVAEEINNNTVNIKDLS-- 593

Query: 599 GVENLQSTLRACADLEQQAARLK---QLVGSFRI 629
            ++  ++   A  ++  Q +++K   +L+  F+I
Sbjct: 594 -IKLSEAASNAGTEMNAQVSKVKEQNELLNEFKI 626