Pairwise Alignments

Query, 432 a.a., porin from Pseudomonas simiae WCS417

Subject, 416 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  251 bits (640), Expect = 4e-71
 Identities = 155/434 (35%), Positives = 227/434 (52%), Gaps = 29/434 (6%)

Query: 2   RVMKWSMIALAVSAGTTQFAMASAQSDSKGFVEDSTFSINTRALYFSRDFRNNPSGPGSQ 61
           R+      ALA   G     + +A +    F++DS  S+  R  Y +RDFR + +    Q
Sbjct: 3   RIQSVGSRALACLLGAP--CLLTAPAVMADFIDDSKASLQLRNYYLNRDFRQDGA---KQ 57

Query: 62  SRAEETGLGFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGTGLFPTGSDGRSQ-D 120
           ++A E   GF   ++SGFT+G IG+G+D IG LGVKLDS   R GTGL P G   +   D
Sbjct: 58  AKAAEWAQGFVTRFESGFTEGPIGLGLDAIGELGVKLDSSSDRRGTGLLPFGPTSKEPVD 117

Query: 121 DYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEIKGLKLEGG 180
           DYS+ G   K R+   VL++G      PV   +D+RLLP   QG  +TS  + GL  +GG
Sbjct: 118 DYSELGLTAKLRVDQNVLRLGTLQPWLPVVIFNDTRLLPSTFQGGMLTSQALDGLTFDGG 177

Query: 181 HFTSSVAQNQTYHDSLGLTKT-----DFVGGVYSFTPEFTGSLYYAKTEDYFRKYYSNLN 235
             T +  ++ +  + +G         DF GG Y+  P+   S YY   E+ +R+ +  L 
Sbjct: 178 RLTQANPRDSSAREKIGFGSATSDAFDFAGGSYAINPQLAVSYYYGNLENIYRQQFVGLV 237

Query: 236 WTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRAFSLQGAYTIGAH 295
              +L +  S   D   +D++ DGE  +RA            ++DNR F+     + G H
Sbjct: 238 HNTSLGNGFSLRTDLRYFDSRGDGE--ERA-----------GEIDNRNFNGIVGLSHGGH 284

Query: 296 TFTLAAQKVTGDGDYGYGVDGGGTVFLANSIARSDFNAEGEKSYQARYDINMATFGIPGL 355
             +   Q  +GD  +      GG  ++ N +   DF    + S+Q RYD N A  G+PGL
Sbjct: 285 RVSAGWQIQSGDSRFPSL--NGGAAYVVNLVTLHDFTHADQDSWQLRYDYNFAALGLPGL 342

Query: 356 SFMTRYVTGSGANTATTSNGKEWERDIEAKYVIQSGPAKDLSLRIRQATYRSSDGVYYGS 415
           SFMTRYV G  A T  + +G+EWERD +  YV+QSG  K LS++ R  ++RS +G+    
Sbjct: 343 SFMTRYVDGRNARTNFSRSGEEWERDSDITYVVQSGALKGLSVQWRNLSFRSGNGL---K 399

Query: 416 SSIDELRLIANYPL 429
           ++IDE R+I NY L
Sbjct: 400 TAIDENRVILNYTL 413