Pairwise Alignments

Query, 203 a.a., ATP-dependent DNA helicase RuvA from Pseudomonas simiae WCS417

Subject, 207 a.a., Holliday junction DNA helicase motor protein from Synechococcus elongatus PCC 7942

 Score =  157 bits (397), Expect = 1e-43
 Identities = 89/208 (42%), Positives = 130/208 (62%), Gaps = 15/208 (7%)

Query: 1   MIGRLRGTLA--EKQPPHLIL--DVNGLGYELEVPMTTLYRLPSVGEPITLHTHLVVRED 56
           MIG L+G+LA   KQ   L+L  DV G+GYE++ P  +L  LP+ G+ + + THL VRED
Sbjct: 1   MIGYLQGSLAGVRKQSGRLLLLLDVQGVGYEVQTPARSLVELPAAGQSLQVFTHLQVRED 60

Query: 57  AQLLYGFIGKRDRDFFRELIRLNGVGPKLALALMSSLEVDELVRAVSAQDTSALTKVPGV 116
             LL+GF+   +RD FR+LI ++G+GP+L LAL+ SL + ELV+A+ A +T  L++ PGV
Sbjct: 61  QWLLFGFLQMAERDLFRQLISVSGIGPQLGLALLDSLSLAELVQAIVAGNTRLLSRTPGV 120

Query: 117 GKKTAERLLVELKDRFKAWEVVPSMFALVPNQPDMPAAQVASAESDAVNALISLGYKPQE 176
           G KTAERL +EL+ +   W     +       P   AA +A+ + D    L++LGY  +E
Sbjct: 121 GAKTAERLALELRSKLAEWREEAGLL------PSATAAPIAAVQEDVEMTLLALGYNNRE 174

Query: 177 ASKAVSAIKDKNL-----SAEDMIRRAL 199
             +A++AI  +NL      AED IR A+
Sbjct: 175 ILQALTAIAQENLVQSGQPAEDWIREAI 202