Pairwise Alignments

Query, 502 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 512 a.a., transcriptional regulatory protein TyrR (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  328 bits (840), Expect = 4e-94
 Identities = 201/522 (38%), Positives = 297/522 (56%), Gaps = 38/522 (7%)

Query: 1   MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPN-VYIDAPTLSADVLEELRDALFS 59
           MR+ VS  DRVG+ +++L +L    +NL A++      +Y+    +S + L  L   +  
Sbjct: 1   MRLEVSCQDRVGLAKDILVVLERYGINLIAIDASNQGFLYLQFAEVSFETLSALMPQIRK 60

Query: 60  VQGVQAVKVVDILPGQRRHLQLDALLAAMTDPVLALDSAGKILLANPALIALYG---REP 116
           V+ V  V+ V  +P ++ H  L  LL  + D V ++D   +I + N + +   G    E 
Sbjct: 61  VESVHDVRTVSFMPSEQEHYALKTLLKTLPDSVFSIDVKARIRIVNESALLNMGMGEHEV 120

Query: 117 AGESISEL---FNDPALLDTLLEQGFRLP-LREISVNGQTLLLDATPI---------TDA 163
             ES++     FN        L +G  LP    +++     L +  PI            
Sbjct: 121 LDESLNHWVQGFN----FSRWLSEGQVLPQAARVNIGQNEYLAEMLPIYLPDEDEKTILV 176

Query: 164 GALLTLYQPNRIGEQLSALHHDHAEGFDALLGESPVIRTLKARAQRVAALDAPLLIQGET 223
           GA+++L  P R+G+Q +AL +    GF+ +L  S  ++ +  +A+R+A LDAPLLI GET
Sbjct: 177 GAVVSLKSPARVGKQFNALQNQ-TTGFENVLASSDKMKEVLKQARRMAQLDAPLLITGET 235

Query: 224 GTGKELVARACHAISARHSAPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLME 283
           GTGKEL+ARA H  S R   PF+A+NCAALP++ AE ELFGY         +  K G  E
Sbjct: 236 GTGKELMARASHDASMRREKPFIAINCAALPDSAAEEELFGYVSQG-----KVIKRGFFE 290

Query: 284 LANQGTVFLDEIGEMSPYLQAKLLRFLNDGSFRRVGGDREVKVNVRILSATHRDLEKMVS 343
            A  GTVFLDE+ EMS   Q KLLR L DG+FRR+GGD EV+ +VRI+ +T ++L ++  
Sbjct: 291 EAKGGTVFLDEVAEMSKAAQVKLLRLLQDGTFRRIGGDEEVRADVRIICSTQKNLAELCQ 350

Query: 344 EGTFREDLFYRLNVLNVEVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALL 403
            G FREDL+YR++VL+  +P LRER  DI+ L   F++    Q+  PV R++      LL
Sbjct: 351 TGEFREDLYYRIHVLSYHIPSLRERKVDIIPLTEMFLEHYSQQLSSPVRRISAQCRDHLL 410

Query: 404 GNRWPGNVRQLQNVIFRAAAICESSLVDIGDLDIAGTSVARQSDG-------EIDSLEQA 456
              WPGNVRQL+N +FRA ++ + S    G+L +    +   ++G          +L+ A
Sbjct: 411 TYAWPGNVRQLKNAVFRAVSMWDGS----GELTVEQLKLPSYAEGFGYFDNAFEGNLDDA 466

Query: 457 VEDFERNLLETLYTSYPSTRQLASRLQTSHTAIAHRLRKYGI 498
           ++ FE +LL  LY +YPSTRQLA +L  SHTAIA++LR+Y I
Sbjct: 467 MKQFEASLLRRLYPAYPSTRQLAKKLGVSHTAIANKLREYKI 508