Pairwise Alignments

Query, 225 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 227 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  187 bits (475), Expect = 1e-52
 Identities = 104/226 (46%), Positives = 142/226 (62%), Gaps = 4/226 (1%)

Query: 1   MSELLLIDDDQELCELLTSWLSQEGFQVRACHDGLSARKALADSAPAAVVLDVMLPDGSG 60
           MS++LLIDDD  L ELL   L  EGF +   HDG +      +     ++LDVMLP  +G
Sbjct: 1   MSQILLIDDDLGLAELLAQLLELEGFNLTLAHDGEAGLALALEQQFDLILLDVMLPKLNG 60

Query: 61  LELLKQLRNDHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRS 120
            E+LK LR+   + PVLML+ARG+ +DR++GLE+GADDYL KP + REL AR++A++RR+
Sbjct: 61  FEVLKALRSKK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRT 119

Query: 121 HPAAVSTQ---LELGDLCFSPVRGVVSIDEQEFALTVSESRLLEALLRQPGEPLDKQELA 177
                  Q   LE  D+   P R  V   +Q   LT +E  LL  +++  GE L K  L+
Sbjct: 120 SHQMDEQQPSILEFADIKLDPSRQEVLCQDQLLILTGTEFSLLYHMIQHSGEVLSKDNLS 179

Query: 178 QIALGRKLTLYDRSLDMHVSNLRKKIGPHPDGRPRIVALRSRGYYY 223
           +  LG+KL  +DRSLDMH+SNLRKK+    DGRPR+  LR +GY +
Sbjct: 180 ENVLGKKLMPFDRSLDMHLSNLRKKLPERADGRPRVKTLRGKGYIW 225