Pairwise Alignments

Query, 403 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

Subject, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

 Score =  293 bits (749), Expect = 6e-84
 Identities = 160/324 (49%), Positives = 210/324 (64%), Gaps = 12/324 (3%)

Query: 17  EKLQKVLARIGVGSRRDVEAWITQKRIKVNGVEATLGQRVDLHDAIT-IDGKVIKREEAA 75
           EKLQKVLAR G GSRR++EA I   R+ VNG  A LG+R++  +A+  IDG V+  +   
Sbjct: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62

Query: 76  ESVRRVIMYNKPDGEICTRDDPEGRPTVFDKMPKPKEGRWINIGRLDINTTGLLMFTTDG 135
           E + RV+ Y KP+GE+CTR DPEGR TVFD++PK +  RWI++GRLD NT+GLL+FTTDG
Sbjct: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122

Query: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDGPAKFTDIKQAPGGEGFNH 195
           ELANRLMHPS +++REY VRV G+V +E +  L  GV LEDG A+F D+  A GGEG NH
Sbjct: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA-GGEGINH 181

Query: 196 WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREMSQYEVDILSA 255
            ++ V+ EGRNREVRRLWESQG  VSRLKRVR+G +FL+  LP G W E+   +V+ L  
Sbjct: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241

Query: 256 EVGLTPVAMPQMNAKSKDKLERMQRKSSRPVART-----ERVARTLRPALNAPATGGRIS 310
            V L P     +N        + +R  S+ + R      ER++ T   +  APA      
Sbjct: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPA-----R 296

Query: 311 REPQIEGERRPTAPSRQEGERAPR 334
           R+P  E   R    ++Q+  R PR
Sbjct: 297 RKPGGESSTRNKVANQQQSSRKPR 320