Pairwise Alignments

Query, 403 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

Subject, 626 a.a., pseudouridine synthase from Burkholderia phytofirmans PsJN

 Score =  259 bits (662), Expect = 2e-73
 Identities = 166/384 (43%), Positives = 217/384 (56%), Gaps = 23/384 (5%)

Query: 18  KLQKVLARIGVGSRRDVEAWITQKRIKVNGVEATLGQRVDLHDAITIDGKVIKREEAAES 77
           KL KVLA  G+GSRRD+E  I   R+ VNG  A +GQR+   D + I+GK +KR+  A  
Sbjct: 213 KLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRK-LANK 271

Query: 78  VRRVIMYNKPDGEICTRDDPEGRPTVFDKMPKPKEGRWINIGRLDINTTGLLMFTTDGEL 137
             RV++Y+KP GEI +  DPEGR +VFD +P  K  +W+ +GRLD NT GLLM TT G+L
Sbjct: 272 PPRVLLYHKPTGEIVSHADPEGRASVFDNLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDL 331

Query: 138 ANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVVLEDGPAKFTDIKQAPGGEGFNHWY 197
           ANR MHP Y ++REYAVRV GE+ + M ++L  GV LEDGPA F  I+   GGEG NHWY
Sbjct: 332 ANRFMHPRYSVEREYAVRVVGELAEGMRQKLLNGVELEDGPANFLRIRDG-GGEGTNHWY 390

Query: 198 HCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLNSDLPMGRWREMSQYEVDILSAEV 257
           H  + EGRNREVRR++E+ GL+VSRL R R GP+ L   L  GRW E+   +V  L A V
Sbjct: 391 HVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMASV 450

Query: 258 GLTPVAMPQMNAKSKDKLERMQRKSSRPVARTERVARTLRPALNAPATGGRISREPQIEG 317
           GL          +   + E  +RK   P+ +T        P L + +   +  ++P+ +G
Sbjct: 451 GL-----KAPTEEKGGRREAPERKQPDPM-QTSMGFIGREPVLMSHSRFDQ--QQPRGQG 502

Query: 318 ERRPTAPSRQEGERAPRAPRPAPAGGRSNRGEADRPADNASTKRPAKPAANKRPGPKLVA 377
           + R  A     G  A         GG  NRG A R A   S      P      GP+   
Sbjct: 503 QGRRGAAGGGFGGGA----GAGFGGGYGNRG-AGRGAGGFS-----GPMGGGAGGPR-GG 551

Query: 378 DEPSGKRRGAPAGSGQRPGFGRKK 401
            E  G R  AP+G+G R   G K+
Sbjct: 552 REVDGNR--APSGNGNRAAGGGKR 573



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 269 AKSKDKLERMQRKSSRPVARTERVARTLRPALNAPATGGRISREPQIEGE--RRPTAPSR 326
           A  +D+  R  R+  R +    R     + A  APA G  +  E   +GE   +   P +
Sbjct: 43  ADGEDRPRRGLRRGPRSLIARRRAGAKTKGAEGAPAQGAPVVTEAPPDGEVVAQVRMPRK 102

Query: 327 QEGERAPRAPRPAPAGGRSNRGEADRPADNASTKRPAKPAANKRPGPKLVADEPSGKRRG 386
             G +  + PR   AG +  R  A R       +R  +     R G +   +   G+   
Sbjct: 103 DAGAKG-QGPRRNAAGAK--REGAPRDGAPREGQREGQRERQPREGGQRQNNRRGGEAPA 159

Query: 387 APAGSGQ 393
           A A +GQ
Sbjct: 160 AAAVAGQ 166



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 328 EGERA-PRAPRPAPAGGRSNRGEADRPADNASTKRPAKPAANKRPGPK-LVADEPSGKR- 384
           E ERA P A        +++ GE +RPA         +P    R GP+ L+A   +G + 
Sbjct: 11  ESERAVPSARADETRTTQASAGEGERPAQTTEADGEDRPRRGLRRGPRSLIARRRAGAKT 70

Query: 385 ---RGAPA 389
               GAPA
Sbjct: 71  KGAEGAPA 78