Pairwise Alignments

Query, 562 a.a., long-chain fatty acid--CoA ligase from Pseudomonas simiae WCS417

Subject, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

 Score =  578 bits (1490), Expect = e-169
 Identities = 277/555 (49%), Positives = 391/555 (70%), Gaps = 7/555 (1%)

Query: 6   WNDKRAAGVPNDIDLSAYKSVIEVFERSCKAFADRPAFSNMGITLTYAELERQSAAFAGY 65
           W  +    VP  I+   Y S++E+FE+S   +AD+PAF NMG  +T+ +LE +S AFA Y
Sbjct: 5   WLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAFAAY 64

Query: 66  LQQHTDLKPGDRIAVQMPNVLHYPIAVFGALRAGLIVVNTNPLYTPREMRHQFKDAGVRA 125
           LQ    LK GDR+A+ MPN+L YP+A+FG LRAG+I VN NPLYTPRE+ HQ  DA  RA
Sbjct: 65  LQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDADARA 124

Query: 126 LVYLNLFGSRVQEVCSDTEIDYLIEARMGDFMPTAKGWLVNTLVDKVKKMVPAYSLPRAV 185
           +V ++ F + ++++ ++T++ +++   +G  +P AKG +V+ +V  VK MVP Y LP A+
Sbjct: 125 IVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLPGAI 184

Query: 186 AFKRALHMGAGLGVTRHPVTLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMQQVRACMSQ 245
           + ++ALH G  L   +  ++ +DIA LQYTGGTTG+AKGA+LTH N+VAN+ Q +     
Sbjct: 185 SMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKGAYG- 243

Query: 246 TGDDGHPLIKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIGGFIKELKK 305
                 P+++EG+E+++  LPLYH++A T NC+  +  G  N+LITNPRDI GF+KEL+K
Sbjct: 244 ------PVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQK 297

Query: 306 WRFTGLLGLNTLFVALMDHPDFKSLDFSHLKLTNSGGTALIKATAERWQQITGCAIGEGY 365
           + FT + G+NTLF AL+++ DF  LDF ++KL   GG A+ +A AERW++ TG  + EGY
Sbjct: 298 YPFTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGY 357

Query: 366 GLTETSPVASTNPYGNKSRLGTVGIPVPATAMKVIDDHGVELPLGERGELCIKGPQVMKG 425
           GLTE SP+ + NPY      G +G+PVP+T ++++DD G  +P  + GEL ++GPQVM+G
Sbjct: 358 GLTECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQG 417

Query: 426 YWQQPEATAEALDAEGWLKTGDIAVIDEEGFVSIVDRKKDLIIVSGFNVYPNEIEDVVMA 485
           YWQ+PEAT E L+AEGWL TGDI   D++G + IVDRKKD+I+VSGFNVYPNEIEDVV  
Sbjct: 418 YWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVAL 477

Query: 486 HPAVANCAVIGVPDERTGEAVKLFVVARAEGVSLEELKAYCKTNFTGYKVPKHIVLRDSL 545
           H  V   A IG  ++ +GE VK++VV R   ++ +E+ A+C+ + TGYKVPK +  RD L
Sbjct: 478 HGKVLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDDL 537

Query: 546 PMTPVGKILRRELRD 560
           P T VGKILRR LR+
Sbjct: 538 PKTNVGKILRRVLRE 552