Pairwise Alignments

Query, 563 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) from Pseudomonas simiae WCS417

Subject, 571 a.a., AMP-binding protein from Rhodopseudomonas palustris CGA009

 Score =  220 bits (561), Expect = 1e-61
 Identities = 169/567 (29%), Positives = 279/567 (49%), Gaps = 36/567 (6%)

Query: 4   DFWKDKYPAGIAAEINPDEYPNIQAVLKQSCQRFAN----KPAFSNLGKTITYGELYELS 59
           + W   +P     E    +Y + +  L +  + +A     +PA    G   TY +L E S
Sbjct: 16  ELWAKAWPKDTPRE---PQYLHGEVALSEYLRAWAKSAPLRPAVIFYGHVTTYADLDEQS 72

Query: 60  GAFAAYLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAIRAGLIVVNTNPLYTAREMEHQFN 119
             FAA L Q   +K GDR+AV LPN  Q+ +  FG ++ G I V  +PL  A E+ ++ N
Sbjct: 73  DRFAALLLQK-GVKKGDRVAVFLPNCPQFHIVFFGILKLGAIHVPVSPLSRAFELSYELN 131

Query: 120 DSGAKALVCLANMAHLAEKVVPKTAVKHVIVTEVADLLPPLKRLLINSVIKYVKKMVPAY 179
           D+ A+ +V L  +A + E+V  +T+++ VIVT  AD++P    + +   +   + +VP  
Sbjct: 132 DTDAEVIVALDQLAGVVEQVRAETSLREVIVTSFADVIPSDPTIPVPDSVSGSRIIVPG- 190

Query: 180 HLPNAIKFNDVLAKGHGQPVSDASPTSS--DVAVLQYTGGTTGVAKGAMLTHRNLVANML 237
                    D+L+     P  +  P ++  +VA L YTGGTTG+ KG + T R++V    
Sbjct: 191 -------ATDLLSALAALPKPEPLPPAALDEVAALNYTGGTTGMPKGCVHTQRDMVYTAA 243

Query: 238 QCKALMGSNLNEGCEILITPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELS 297
               +  S + +   + ++  P + I    F  +  +  G   +L++   D   ++  + 
Sbjct: 244 ANHGI--SVVADQNSVFLSFFPEFWIAGENFGLIFPLFTGATLVLLAR-WDALGVLTAIQ 300

Query: 298 KWKFSGFVGLNTLFVALCNNEAFRKLDFSALKV--TLSGGMALQLAAAERWKAVTGCGIC 355
           ++K +         V L ++  F++ D S+L     +S    L     +RWK +TG  + 
Sbjct: 301 RYKVNVTAMPVDGAVELMDHPRFKEFDLSSLSQVRVVSFVKKLNPTYRKRWKDLTGTILT 360

Query: 356 E-GYGMTETSPVATVNPIQH-------IQIGTIGIPVPSTVCKVI-ADDGTELALGETGE 406
           E  +GMTET    T              Q   +G+PVP    K+   + G  + LG  GE
Sbjct: 361 EAAWGMTETHTSNTFTAGFQGDDFDLVSQPIFVGLPVPGAEFKITDFETGKLVPLGGEGE 420

Query: 407 LCVKGPQVMKGYWQRQDATDEMLDSEGWLKTGDIAIIQPDGYMRIVDRKKDMILVSGFNV 466
           + V+ P ++K YW + +AT E L  +GWL+TGDI  I P G++  + R+K+M+ V G +V
Sbjct: 421 IRVRTPSLLKSYWNKPEATAESL-VDGWLRTGDIGTIDPQGFLHFLGRRKEMLKVKGMSV 479

Query: 467 YPNELEDVLAGLPGVLQCAAIGVPDEKSGEHIKLFIVVKPGA--TLTKEQVMEHMRANVT 524
           +P E+E +L   P VL    +G  D   G+    FI +KP A  T+T  ++       + 
Sbjct: 480 FPPEIEALLGQHPKVLGSGVVGRDDPGKGQVPVAFIQLKPEAEGTITPAELQAWCAERMA 539

Query: 525 AYKVPKAVEFRDALPTTNVGKILRREL 551
            YKVP+ +   DALP T  GK+ ++EL
Sbjct: 540 VYKVPE-IRIIDALPMTATGKVKKQEL 565