Pairwise Alignments

Query, 439 a.a., pili assembly chaperone from Pseudomonas simiae WCS417

Subject, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  337 bits (864), Expect = 4e-97
 Identities = 186/413 (45%), Positives = 268/413 (64%), Gaps = 20/413 (4%)

Query: 29  AISRSMAMIEFDVSGVILDANDNFCNTMGYSAEEIRGKHHRLFCDEAYTHTDAYAKLWRD 88
           ++S  +A IEFD SG ++ AN  F N +GY  EE+ GKHHR+FC  A   +  Y + W  
Sbjct: 22  SLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTS 81

Query: 89  LARGEALSGTFMRLNKHGQEVWLEASYMPVLDKDNQVQSVIKVASDITARVHHEHENQSL 148
           LA+G++ SGTFMR  K G  + LEA+Y P+   D +V SV+K+ASD+T +  H    + L
Sbjct: 82  LAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQYLHAESQRDL 140

Query: 149 IDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSMFCHRSEVESPAYKAFW 208
           + A+ ++ AVIEF P G I++AN  FLKT+ YSLD+I G+HH +FC     +   +  FW
Sbjct: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQ--HPTFW 198

Query: 209 ASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQVTT---LR 265
            SL  G+ +S RF RKN YG  ++++ASY+P+ D N ++YK+VKFASDIT +V     + 
Sbjct: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258

Query: 266 NAADSAHATSVQNDACARKGSEVVQQTVQIIEEISHDLNQAAVSIDAVSKQSDIIGAIVQ 325
           +AA+ A++TSV+    A+ G+ V+Q +V++ E++  ++ Q+   I+ +   S  +  IV+
Sbjct: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318

Query: 326 TIRSIAEQTNMLALNAAIEAARAGEHGRGFAVVADEVRSLAARTSQATVEIVDVVRKNHD 385
           TI  IA+QTN+LALNAAIEAARAGE GRGFAVVADEVR LA+RTS+AT EI  VV KN  
Sbjct: 319 TISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKN-- 376

Query: 386 LSLSAVSSMQSSLSRTGVGVELANEAGQVILE-------IQEGSRHVVDAIGQ 431
             LS   ++ SS+S+     ++ANE    I+E       I +G+ +V  A+ Q
Sbjct: 377 --LSLTEAVTSSISQVS---QIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424



 Score =  122 bits (306), Expect = 2e-32
 Identities = 58/119 (48%), Positives = 82/119 (68%), Gaps = 4/119 (3%)

Query: 27  LAAISRSMAMIEFDVSGVILDANDNFCNTMGYSAEEIRGKHHRLFC-DEAYTHTDAYAKL 85
           L A++++ A+IEF+  G I+ AN  F  TMGYS ++I+GKHHRLFC DE Y     +   
Sbjct: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFY---QQHPTF 197

Query: 86  WRDLARGEALSGTFMRLNKHGQEVWLEASYMPVLDKDNQVQSVIKVASDITARVHHEHE 144
           W+ LA G+A SG F+R N +G +VW++ASY PV D++N+V  ++K ASDITA V  E +
Sbjct: 198 WKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQ 256



 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 1/114 (0%)

Query: 147 SLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSMFCHRSEVESPAYKA 206
           +++ ++   +A IEF   G +++AN  FL  V Y L+E+ G+HH +FC  +E +S  Y+ 
Sbjct: 18  NIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQ 77

Query: 207 FWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQ 260
           FW SL +G+ HS  F R  K G  L LEA+Y PI  T+G++  V+K ASD+T+Q
Sbjct: 78  FWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQ 130