Pairwise Alignments

Query, 439 a.a., pili assembly chaperone from Pseudomonas simiae WCS417

Subject, 438 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  327 bits (838), Expect = 5e-94
 Identities = 180/403 (44%), Positives = 252/403 (62%), Gaps = 7/403 (1%)

Query: 27  LAAISRSMAMIEFDVSGVILDANDNFCNTMGYSAEEIRGKHHRLFCDEAYTHTDAYAKLW 86
           ++A+ R++A IEFD  G ILDAN  F + MGY+ EE+ G+HH++FCD    ++  YA+ W
Sbjct: 29  VSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVNSLEYAQFW 88

Query: 87  RDLARGEALSGTFMRLNKHGQEVWLEASYMPVLDKDNQVQSVIKVASDITARVHHEHENQ 146
           + LA+G+A    F RL K G  +W+EA+YMPV ++   V  VIKVA D+T       +  
Sbjct: 89  KSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKAKITADKQA 148

Query: 147 SLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSMFC-HRSEVESPAYK 205
           ++  ++ RS A+I+F P G I  ANENFLK   Y L+EIVG+HH MFC  R   E+P   
Sbjct: 149 AVFHSLDRSSAMIQFNPDGTIKEANENFLKATGYRLEEIVGKHHRMFCDDRFYKENP--- 205

Query: 206 AFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQVT--- 262
            FW  L RGE+ S  F R+ ++G+ L+LEA+YNPIF+  G + +VVKFASD+TDQV    
Sbjct: 206 NFWRELARGEFKSGLFHRRTRHGQDLWLEATYNPIFNDAGVVTQVVKFASDVTDQVLKAH 265

Query: 263 TLRNAADSAHATSVQNDACARKGSEVVQQTVQIIEEISHDLNQAAVSIDAVSKQSDIIGA 322
             + A+  A  TS +    A  G E++     I   I+  +  A   +  +S QS  I  
Sbjct: 266 ATKEASQMAQQTSAETVRVAESGREMIDAAATIASGITESIAGANALMTDLSSQSQRITQ 325

Query: 323 IVQTIRSIAEQTNMLALNAAIEAARAGEHGRGFAVVADEVRSLAARTSQATVEIVDVVRK 382
           IV TI  IAEQTN+LALNAAIEAARAGE+GRGFAVVADEVRSLA+ TSQAT EI ++V++
Sbjct: 326 IVTTINKIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRSLASNTSQATSEIDNIVKR 385

Query: 383 NHDLSLSAVSSMQSSLSRTGVGVELANEAGQVILEIQEGSRHV 425
           N  L+  +  +M+   ++      +  +   +I +IQ  + +V
Sbjct: 386 NSQLTEQSGQTMEQIQAKVTEFNHMLQQTQSLIEQIQHAAENV 428



 Score =  107 bits (268), Expect = 6e-28
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 1/133 (0%)

Query: 141 HEHENQSLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSMFCHRSEVE 200
           H H++  ++ A+ R++A IEF PQG+IL+AN  FL  + Y+ +E++GQHH +FC    V 
Sbjct: 22  HNHDSD-IVSALKRNLAYIEFDPQGKILDANALFLSAMGYTKEEVIGQHHKIFCDPETVN 80

Query: 201 SPAYKAFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQ 260
           S  Y  FW SL +G+     F R  K G ++++EA+Y P+ +  G +YKV+K A D+T  
Sbjct: 81  SLEYAQFWKSLAQGQAQRKMFHRLKKDGSSIWIEATYMPVRNRAGDVYKVIKVAHDVTKA 140

Query: 261 VTTLRNAADSAHA 273
             T    A   H+
Sbjct: 141 KITADKQAAVFHS 153