Pairwise Alignments

Query, 439 a.a., pili assembly chaperone from Pseudomonas simiae WCS417

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  175 bits (443), Expect = 4e-48
 Identities = 141/497 (28%), Positives = 222/497 (44%), Gaps = 104/497 (20%)

Query: 23  SNAKLAAISRSMAMIEFDVSGVILDANDNFCNTMGYSAEEIRGKHHRLFCDEAYTHTD-A 81
           + A +  I   +A++E + +G I  A+D F +    SAE + G     F +   TH   +
Sbjct: 65  NQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGAD---FANLWRTHQQPS 121

Query: 82  YAKLWRDLARGEALSGTFMRLNKHGQEVWLEASYMPVLDKDNQVQSVIKVASDITARVHH 141
             +L +D  +G  +S   ++L++  + +W++A   P+   + Q+Q+V+ +  DITA    
Sbjct: 122 VQRLLQDAKKGHPVSAE-LQLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDITAAKLE 180

Query: 142 EHENQSLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSMFCHRSEVES 201
           + +    ++A+  + AVIEFT  G IL AN+NFL+TV Y LDEI G+HHSMF      +S
Sbjct: 181 KIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQS 240

Query: 202 PAYKAFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQ- 260
             Y+ FW  L  GE+    ++R  K GK ++++ASYNPI D+ G+ YKVVK+A+++T + 
Sbjct: 241 QEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRK 300

Query: 261 ---------VTTLRNAADSAHATSVQNDACARKGSEVVQQTVQIIEEISHDLNQAAVSI- 310
                    +T L +   SA  T       A  G EV+ Q +  + +I  D+N  A +I 
Sbjct: 301 MVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELG-EVISQFIVTLRQIITDINSVAATIK 359

Query: 311 -----------DAVSKQSDIIGAIVQTIRSIAE-------------QTNMLALNAAIEAA 346
                      D  S+       + QT  S+ E             Q N+LA  A   AA
Sbjct: 360 LAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAA 419

Query: 347 RAG-------------------------------------------------EHGRGFAV 357
             G                                                 E GRGF+V
Sbjct: 420 SGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSV 479

Query: 358 VADEVRSLAARTSQATVEIVDVVRKNHDLSLSAVSSMQSSLSRTGVGVELANEAGQVILE 417
           VA EVRSLA R++ A  +I  ++                S+S+   G EL + +G  + +
Sbjct: 480 VASEVRSLAQRSANAAKDIKALI--------------SDSVSKISNGNELVDRSGSTMKD 525

Query: 418 IQEGSRHVVDAIGQFNS 434
           I    + V D +    S
Sbjct: 526 IVVSIKRVHDLMADIAS 542