Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 669 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  283 bits (724), Expect = 2e-80
 Identities = 191/576 (33%), Positives = 283/576 (49%), Gaps = 44/576 (7%)

Query: 43  VSEQPDLDLESLL--HRQVYLGFDDRGRGVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYL 100
           +++   LDL + +  H    L  D   R +  LV  + Q  +     RYQ+ L P L +L
Sbjct: 43  INDGASLDLTTAVASHVTTTLHKDALLRPLDWLVAEIRQLPADATAERYQLLLRPWLWWL 102

Query: 101 GHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRL 160
             +S+ R+FQ+     IV  + +  G     F+ +L+G+Y  REYCVQ+ ETDLAF+ RL
Sbjct: 103 SLASNNRVFQNLATSDIVTTIFKAHGFTD--FQLKLTGSYTPREYCVQYSETDLAFVSRL 160

Query: 161 CAELGIHYHFQHSSAGHLLVFGDDQTVF--VQADPPTPYTPGSGMVADTPVIKRFAVQVQ 218
             E GI + F H    H LV  D    F  +   P   Y        +   I+   V +Q
Sbjct: 161 LEEEGIFWFFTHEEGTHTLVLADSNDAFAPIPNGPTVNYLGQRIGERELHGIRSGQVCLQ 220

Query: 219 ARTTGVNLRDYDFRKPSLALESEVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRS 278
           A        DY+F  P+ +L S+       P     +PG +  +A G  L ++ ++  RS
Sbjct: 221 AVAGVYQATDYEFTTPTTSLYSQAEAVA-GPSSVYEHPGGYTAKAQGDALTKQRVDGLRS 279

Query: 279 DYRVARGSGDEPALGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGD 338
             +   G  D   L  G +  LAGH     N  W+VT V+HE                  
Sbjct: 280 QEQRFVGESDCRWLVPGYWFTLAGHEDTTLNIDWVVTSVSHEASH--------------- 324

Query: 339 FRQGYRNEFSATPWDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVW 398
               YRN F A P   ++RPP    P+P +   Q A+V G A  EI  DEYGR+K+Q  W
Sbjct: 325 --DSYRNRFEAIPKATVYRPPRLT-PKPRMYT-QTALVVGKAGEEIWTDEYGRIKLQFPW 380

Query: 399 DRDGEHNDHSSCWLRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAAT 458
           DR G++++ SSCW+RV   W+   +G   +PR+G EV+V F++GD D PLV GC+ N   
Sbjct: 381 DRTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTGCVYNGDN 440

Query: 459 QVPLDLPADKTRSVFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNV 518
            +P  LPA++T+S  ++QSS GGGG+NELR ED+K AEE++L+AQ+D+  +VL+D    V
Sbjct: 441 ALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEVFLQAQKDFNINVLNDTTATV 500

Query: 519 DGESHHELQGEELR-ITHGNRLTDLKQ----------DDHLMVGGSRQVRAG--QTIQIG 565
             +    +Q    R +  G+    L++           D L V  +R V  G  QT   G
Sbjct: 501 GHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDSLDVKDTRTVTVGSDQTHSTG 560

Query: 566 AGQSVVIEGGATVTIQAG-----GQSITLCAGGIFS 596
                 + G  ++T+          ++TL +GG F+
Sbjct: 561 GNYEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFA 596