Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  348 bits (894), Expect = e-100
 Identities = 232/686 (33%), Positives = 339/686 (49%), Gaps = 63/686 (9%)

Query: 10  FTLTLDG-EPSEFKVFEFSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQV 59
           F L +DG E     V  F G ES+S           +R+ ++L S   +L  E  + +  
Sbjct: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65

Query: 60  YLGFDDRGRGV---HGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQ 116
           +L     G+ V   +G+V ++++GD+G R T Y +TLVP L  L   S+ RIFQ ++VP+
Sbjct: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125

Query: 117 IVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAG 176
           I++ +L+  GI+   + F L     +RE+CVQ+ ETDL F+ R+ AE G+ Y   H +  
Sbjct: 126 IISILLQEMGIED--YAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQK 183

Query: 177 HLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSL 236
           H L+F D      +   P PY   +G   + P +     +  A+ +   L+DY F+KP+ 
Sbjct: 184 HTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAY 243

Query: 237 ALESEVTGE----QLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPAL 292
                  G+    Q P  E    PG + D A+GK  +Q  LE  R D  +A    DEP L
Sbjct: 244 GFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLL 303

Query: 293 GSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPW 352
            +G    L  H     N  WLV    H+G QPQ L+E      GG     Y N+    P 
Sbjct: 304 LAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEE-----GGSGATTYSNQLKLIPA 358

Query: 353 DAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWL 412
              +R     +P+  + G   A V GP   EI+CD +GRVKV   WDR    N+ SSCW+
Sbjct: 359 HITWRARPCAKPQ--VDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWV 416

Query: 413 RVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSV 472
           RVA  WA  +YGS+ IPRVG EV+V F+NGD D P++ G   +A    P  LP  KT++V
Sbjct: 417 RVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTV 476

Query: 473 FRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGESHH 524
            R+++   G GYNEL  ED+ G+E+I L AQ+DW        T+ + HD  + VD +   
Sbjct: 477 LRTETHQ-GQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFT 535

Query: 525 ELQGEELRITHGNRLTDLKQDDHLMVGGSRQ--------VRAGQTIQIGAGQSVVIEGGA 576
            +Q  +     G   + +  D    VG S Q        V AG+ I + +G  +V+E GA
Sbjct: 536 RIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEAGA 595

Query: 577 TVTIQAGGQSITLCAGGIFSSVPI-----------------QLGSAP--AATAAPLTPGL 617
            +T++AGG  + + AGG+    P                  QL +AP   A A P+   +
Sbjct: 596 ELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRMLAQAKPVAELV 655

Query: 618 KETVLAVIPAPLSRV-QVASLKRSAP 642
           +  + A + +  +RV  VASL    P
Sbjct: 656 QPDIAASMQSGAARVIDVASLPTMMP 681