Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 694 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  360 bits (925), Expect = e-104
 Identities = 234/698 (33%), Positives = 350/698 (50%), Gaps = 65/698 (9%)

Query: 9   AFTLTLDGEPSEFKVFE-FSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQ 58
           A+++ ++G   E  V   F G ES+S           +R+ ++L S   +L  + ++ ++
Sbjct: 5   AYSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYQMQLASRVSNLTADQMVDKR 64

Query: 59  VYLGFDDRGR---GVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115
             L      +    VHG+V   +QGD G   T YQ+TLVP L  L    + RIFQ +TVP
Sbjct: 65  AELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVP 124

Query: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175
           +I++ +L+  GI    + F L     +RE+CVQ+ E+D+ F+ RL AE G+ Y F H + 
Sbjct: 125 EILSILLQEMGIHD--YAFALKRDCVQREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182

Query: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235
            H L F D      +   P PY   +G   DTP I     + QA  + V L+DY F+KP+
Sbjct: 183 KHTLYFSDASDSLSKLPEPIPYNALAGGTMDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242

Query: 236 LALESEVTGEQLPPLEAQVY----PGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291
            +    V G +L   + +      PG + D  +G   +Q  L+  R     A G  +EP 
Sbjct: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302

Query: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATP 351
           L +G    L  H     N  W+V  + H+G QPQ L+E      GG     Y N+FS  P
Sbjct: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEE-----GGSGATTYNNQFSLIP 357

Query: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411
               +R     QP+P + G   A V GP   EI CDE+GRVK+   WDR    N+ SSCW
Sbjct: 358 GHLHWRAE--PQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCW 415

Query: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471
           +RV+ GWA  +YG + IPR+G EV+V F+NGD D P++ G   +A    P  LP  KT++
Sbjct: 416 VRVSQGWAGSQYGFIAIPRIGHEVIVSFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKT 475

Query: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGESH 523
           V R+++   G G+NEL  ED+ G E+IYL AQ+D+        T  + HD  + V+ +  
Sbjct: 476 VLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDQHLTVENDQF 534

Query: 524 HELQGEELRITHGNRLTDLKQDDHLMVGGSRQVR--------AGQTIQIGAGQSVVIEGG 575
            +++  +     G   T +K D    +GGS Q +        AG  + + AG  +V+E G
Sbjct: 535 TQIKHNQHLTVEGESRTLVKLDCSSEIGGSLQQKIGSKAIYDAGTEVHLKAGNKLVLEAG 594

Query: 576 ATVTIQAGGQSITLCAGGIF---SSVPIQLGSAPAATA------APLTPGLKET------ 620
             +TI+AGG  I + AGG+    S++ +  G +  + +      A L  G+ +       
Sbjct: 595 NELTIKAGGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGGKMAELPQGVDKAKTPQEI 654

Query: 621 -VLAVIP-----APLSRV-QVASLKRSAPFCEECERCK 651
            + AV P     +PL +  Q+ +LK  AP CE CE  K
Sbjct: 655 ELAAVTPTQQSMSPLLKARQIEALKGPAPVCEVCEEAK 692