Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  353 bits (906), Expect = e-101
 Identities = 223/659 (33%), Positives = 329/659 (49%), Gaps = 51/659 (7%)

Query: 9   AFTLTLDGEPSEFKVFE-FSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQ 58
           A+++ ++G   E  V   F G ES+S           +R++++L S   +L  E ++ ++
Sbjct: 5   AYSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKR 64

Query: 59  VYLGFDDRGR---GVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115
             L      +    VHG+V   +QGD G   T YQ+TLVP L  L    + RIFQ +TVP
Sbjct: 65  AELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVP 124

Query: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175
           +I++ +L+  GI    F  +  G   +RE+CVQ+ E+D+ F+ RL AE G+ Y F H + 
Sbjct: 125 EILSILLQEMGINDYAFALKRDGV--QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182

Query: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235
            H L F D      +   P PY    G   DTP I     + QA  + V L+DY F+KP+
Sbjct: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242

Query: 236 LALESEVTGEQLPPLEAQVY----PGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291
            +    V G +L   + +      PG + D  +G   +Q  L+  R     A G  +EP 
Sbjct: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302

Query: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATP 351
           L +G    L  H     N  W+V  + H+G QPQ L+E      GG     Y N+FS  P
Sbjct: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQED-----GGSGATTYSNQFSLIP 357

Query: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411
               +R     QP+P + G   A V GP   EI CDE+GRVK+   WDR    N+ SSCW
Sbjct: 358 GHLHWRAE--PQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCW 415

Query: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471
           +RV+ GWA  +YG + IPR+G EV+V F+NGD D P++ G   +A    P  LP  KT++
Sbjct: 416 VRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKT 475

Query: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGE-- 521
           V R+++   G G+NEL  ED+ G E+IYL AQ+D+        T  + HD  + V+ +  
Sbjct: 476 VLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQF 534

Query: 522 ------SHHELQGEELRITHGNRLTDLKQDDHLMVGGSRQVRAGQTIQIGAGQSVVIEGG 575
                  H  ++ E      G ++  ++   H+  G      AG  I + AGQ VVIE G
Sbjct: 535 TQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAG 594

Query: 576 ATVTIQAGGQSITLCAGGI-FSSVPIQLGSAPAA-------TAAPLTPGLKETVLAVIP 626
           + +T++AGG  + +   G+  S   + L S  +A        A P  PG  E  +A+ P
Sbjct: 595 SEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVALAP 653