Pairwise Alignments

Query, 229 a.a., ABC transporter for L-Arginine, permease component 1 (from data) from Pseudomonas simiae WCS417

Subject, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  233 bits (595), Expect = 2e-66
 Identities = 118/243 (48%), Positives = 168/243 (69%), Gaps = 19/243 (7%)

Query: 2   LKGYGAVILDGAWLTLQLALSSMALAIVLGLIGVALRLSPVRWLAWLGDLYSTVIRGIPD 61
           L+GY A IL GA LT+++A+ S+ LA++LG++G   +++P RW   +  LY+T+IRGIPD
Sbjct: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63

Query: 62  LVLILLIFYGGQDLLNRVAPMLG-------------------YDDYIDLNPLAAGIGTLG 102
           LVL++LIF+GGQ LLN                            DY+D++P  AG+ T+G
Sbjct: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123

Query: 103 FIFGAYLSETFRGAFMAIPKGQAEAGLAYGMSSFQVFFRVMVPQMIRLAIPGFTNNWLVL 162
           FIFGAY++ETFRGA +A+ KG+ EA  AYGMS+   F R+++PQMIR AIPGF NNWLVL
Sbjct: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183

Query: 163 TKATALISVVGLQDMMFKAKQAADATREPFTFFLAVAAMYLVITSVSLLALRHLEKRYSV 222
            K TAL+S++GL+DM+  +  AA +T+ PFTF++AVA ++L  TSVS   L+ LE+++S+
Sbjct: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243

Query: 223 GVR 225
             R
Sbjct: 244 HTR 246