Pairwise Alignments

Query, 232 a.a., ABC transporter for L-Arginine, permease component 2 (from data) from Pseudomonas simiae WCS417

Subject, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  256 bits (655), Expect = 2e-73
 Identities = 127/227 (55%), Positives = 178/227 (78%), Gaps = 4/227 (1%)

Query: 4   DYNVIWEAMPLYLGGLLTTLKLLAISLFFGLLAALPLGLMRVSKQPIVNGAAWLYTYVIR 63
           D+++I +++P+YL GL TT+ L+++SL  GLL A+PL + R SKQ   +  AW Y Y +R
Sbjct: 2   DFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLR 61

Query: 64  GTPMLVQLFLIYYGLAQFEAVRESFLWPLLSSATFCACLAFAINTSAYTAEIIAGSLKAT 123
           GTP+LVQL+LIYYG+ Q+  V+++ LW     A FCA +AF +NTSAYTAEII G++   
Sbjct: 62  GTPLLVQLYLIYYGMDQWFPVKDT-LW---EHAWFCALVAFILNTSAYTAEIIRGAINGL 117

Query: 124 PNGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGA 183
           P GE+EAAKA GMSR++ Y+RI+LPSALRR+LP YSNEVI ML  +++A IVT++D+TGA
Sbjct: 118 PKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGA 177

Query: 184 ARTVNAQFYLPFEAYITAGVFYLCLTFILVRLFKLAERRWLSYLAPR 230
           AR VN+++Y PFEA+++AG+FY+ LTFI++  FK AE+R+L+YL PR
Sbjct: 178 ARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPR 224