Pairwise Alignments

Query, 232 a.a., ABC transporter for L-Arginine, permease component 2 (from data) from Pseudomonas simiae WCS417

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (318), Expect = 2e-34
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 10/224 (4%)

Query: 1   MIFDYNVIWEAMPLYLGGLLTTLKLLAISLFFGLLAALPLGLMRVSKQPIVNGAAWLYTY 60
           M FD++ + E +P+ L  L TTL++ +  L F L+ AL L  +RV K P+++  + LY  
Sbjct: 1   MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYIS 60

Query: 61  VIRGTPMLVQLFLIYYGLAQFEAVRESFLWPLL--SSATFCACLAFAINTSAYTAEIIAG 118
             RGTP+LVQLFL+YYGL Q        ++PLL    A   A +   ++ +AY AE I  
Sbjct: 61  FFRGTPLLVQLFLLYYGLPQ--------VFPLLVGLDAFSAAVIGLTLHFAAYMAESIRA 112

Query: 119 SLKATPNGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLI 178
           ++      ++EA+ ++GM+  +  RRI+LP A R ALP   N  I M+++TSLA  + + 
Sbjct: 113 AIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVA 172

Query: 179 DITGAARTVNAQFYLPFEAYITAGVFYLCLTFILVRLFKLAERR 222
           +I   A+   +  +  FEA++   + Y  +  +L RL   AE++
Sbjct: 173 EIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQK 216