Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  314 bits (805), Expect = 6e-90
 Identities = 197/518 (38%), Positives = 303/518 (58%), Gaps = 21/518 (4%)

Query: 26  LGVFALNQMSKIRGATEDITMS-SVPSIRALDEFTQLTLRLRVLSYRLLTNREPEVQQKT 84
           LG  A N ++K+      +    SVP    + E ++L  + R        + + + +Q  
Sbjct: 140 LGANADNAVAKVTDVENALRQGDSVPQFNNVVELSKLLQQARYQVRGYTYSGKADAEQPA 199

Query: 85  LEAFEVRNQQIRTAQGIYEKLIESSEERAAYDDYVRLLGQYHQIEERMKSLSRA-NQVEE 143
           L+A E     ++  + +  KL E                   Q  E MK+   A NQ  +
Sbjct: 200 LDAIE---NVLKNFESLPGKLPEQHATNL------------QQAAESMKAYRAAVNQFRD 244

Query: 144 LRSLLNNELLSNSEQVNAVLTRLLDINNKMALATNKDAEDQYNMAFNMVVSLLVIATLLT 203
            +    + L    +Q     T L ++N  +  +  +  + +   A   ++++ V+A    
Sbjct: 245 SQVASASALKRMVDQD----THLHELNKHLTASQIEKRDLETIHAKEALITVAVLALAFG 300

Query: 204 LLFAWLLTRSITLPIAQALEAAEEVAEGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTL 263
           LL AW++TR I +P+ Q L A E VA G+L+  + V   D+ G+L A++ +M   LR  +
Sbjct: 301 LLAAWIITRQIVVPLQQTLVALERVASGDLSHNLVVTRRDDMGQLQASLQRMVISLRQLI 360

Query: 264 QRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTS 323
             I+   TQ+ASAAE+L+AVT++++ G+  Q  E +Q ATA++EMT+ V+EVARNA   S
Sbjct: 361 GGISDGVTQIASAAEQLSAVTEQTSAGVNSQKTETDQVATAMHEMTATVQEVARNAEEAS 420

Query: 324 EASRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLAD 383
           EA+  A   A +G  +V E ++ IER+S +V  +   +G L  ES  IG VLDVI+ +A 
Sbjct: 421 EAAVAADQQAREGEKVVGEAIAQIERLSKEVGISTEAMGHLKRESDKIGSVLDVIKSVAQ 480

Query: 384 QTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVD 443
           QTNLLALNAAIEAARAGEAGRGFAVVADEVR+LA RTQ+ST EIE +I  +Q+GTE    
Sbjct: 481 QTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEDLILGLQSGTEQVAT 540

Query: 444 SMRNSTERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVN 503
           ++ NS    +S++ + + AG SL+ I   +  I   N  IA+AAE+Q+ VA E++R++VN
Sbjct: 541 TLDNSRNLTDSSVELTRRAGGSLENITRTVSAIQSMNQQIAAAAEQQSAVAEEINRSVVN 600

Query: 504 IRDLSVQSATGASQTSAASSELSRLAVDLNGMVGRFRL 541
           +RD+S Q+A+ + +T+A+S+EL+RL V L  +VGRF++
Sbjct: 601 VRDVSEQTASSSEETAASSAELARLGVHLQTLVGRFKV 638



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 52/258 (20%), Positives = 94/258 (36%), Gaps = 26/258 (10%)

Query: 261 DTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAV 320
           ++L  +   + + AS A    A  D     L  +    EQ  TAVNE+   ++E  + A+
Sbjct: 38  NSLSSVISRSDKQASIASINEAAKDLRVARLDYEMRRGEQGPTAVNELLGKLQESIQAAL 97

Query: 321 S--TSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVI 378
                 A +          D  +     + + + + ++  + +G  AN    + KV DV 
Sbjct: 98  KRFVRPADQELLNQQLANVDEYKRAFVDLTQATQNRESARSKLG--ANADNAVAKVTDVE 155

Query: 379 RGLADQ------TNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIG 432
             L          N++ L+  ++ AR    G  ++  AD  +      +      E + G
Sbjct: 156 NALRQGDSVPQFNNVVELSKLLQQARYQVRGYTYSGKADAEQPALDAIENVLKNFESLPG 215

Query: 433 --------SIQAGTEH------AVDSMRNSTERAESTLNIAKGAGMSLDTINTAIV--EI 476
                   ++Q   E       AV+  R+S   + S L         L  +N  +   +I
Sbjct: 216 KLPEQHATNLQQAAESMKAYRAAVNQFRDSQVASASALKRMVDQDTHLHELNKHLTASQI 275

Query: 477 NERNLVIASAAEEQAQVA 494
            +R+L    A E    VA
Sbjct: 276 EKRDLETIHAKEALITVA 293