Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  258 bits (658), Expect = 5e-73
 Identities = 171/549 (31%), Positives = 288/549 (52%), Gaps = 15/549 (2%)

Query: 1   MSLRNMNIAPRAFLGFAFIGALMLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQ 60
           M L+N++I  +    F+ I  + L   ++ ++++ KI+    + T  ++P++  +D    
Sbjct: 1   MFLKNLSIGKKIAASFSVIAVISLGFAIYLISELDKIQSELLNYTDDTLPAMENVDAIKD 60

Query: 61  LTLRLRVLSYRLLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAAYDDYVR 120
                R   + +L  ++    ++T+E       +I  +   Y K +   EE   +   + 
Sbjct: 61  KMSYWRRTQFAVLPMKDEAQIRQTIERNNRVQAEINDSLVAYGKTVWPGEEEQTFKRLMG 120

Query: 121 LLGQYHQIEERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLLDI------NNKMA 174
               Y  + ++          ++   +L N L S  E + +  T L+ I      +NK+ 
Sbjct: 121 NWNAYTAVTDQFNQTLLTQGADDAYPILANSL-STFEALESDFTLLIGILHQAMDSNKVQ 179

Query: 175 LATNKDAEDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAEEVAEGNLT 234
           + ++    +  ++A N  +++L I  L+T    WLLTR I  P+A  ++ +  +A+G+L+
Sbjct: 180 ILSSVKTLNSTSVASN--IAILAIMVLMT----WLLTRLICGPLAIVMKQSNAIAKGDLS 233

Query: 235 RPIKVD--GSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLT 292
           + +     G+DE G L  A  +MQ  LR  +  I  + TQL+SA EE+  ++++SA G+ 
Sbjct: 234 QTMDRSSIGNDELGTLANASEQMQQNLRQLIDEIISAVTQLSSAVEEMTQISNQSADGMK 293

Query: 293 QQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSG 352
           +Q  +I Q ATA+ +M +AV +VARN   ++  +  A   + +G       V +I++++ 
Sbjct: 294 EQQYQITQVATAMAQMKAAVADVARNTEDSASQAMAANHKSQEGARENASMVRSIQQVAD 353

Query: 353 DVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADE 412
            +      + +L  +S  I  V+DVIR +ADQTNLLALNAAIEAARAGE+GRGFAVVADE
Sbjct: 354 IIGEAGQTVSELEQQSSQINVVVDVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADE 413

Query: 413 VRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTA 472
           VR LA RTQ ST EI  +I  +Q   + A D+   S    +  +     +   + +I  +
Sbjct: 414 VRTLAGRTQDSTGEITTIIEKLQVMAKQAKDATERSRSSIDKCVEQGNHSQSLMISIEES 473

Query: 473 IVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDL 532
           I  I +    IASA  EQ  VA E+ RN+ NI   S + A G+ QT+ A  EL++LAV L
Sbjct: 474 IANIADVGTQIASACSEQDSVADELSRNVENIHLASQEVAQGSQQTAQACRELTQLAVSL 533

Query: 533 NGMVGRFRL 541
              + RF++
Sbjct: 534 QDTLRRFKI 542