Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 541 a.a., methyl-accepting chemotaxis protein (NCBI) from Shewanella oneidensis MR-1

 Score =  260 bits (664), Expect = 1e-73
 Identities = 172/543 (31%), Positives = 295/543 (54%), Gaps = 6/543 (1%)

Query: 3   LRNMNIAPRAFLGFAFIGALMLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQLT 62
           +  + I  + F+G      +++ +   A+N M K+  + E I  + V  +  L       
Sbjct: 1   MNGVQIKHKMFIGILVPLLMLVIIAFTAINMMGKLEHSVERIYENQVVPLNDLKIIAD-K 59

Query: 63  LRLRVLSYRLLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAAYDDYVRLL 122
             + V       N       +   A E  ++ I+     Y     + EE         L 
Sbjct: 60  YAVDVNDAVNKANAGGFSASQAANALEDASKTIKLHWQKYLATELTKEESQLTQQAAPLF 119

Query: 123 GQYHQIEERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLLDINNKMALATNKDA- 181
              +Q  E++ S  R+    ++   LN+++L   + ++ + + + ++        +K+  
Sbjct: 120 TAANQQIEQLVSYLRSFN-GDVAHQLNDKILPLYQVIDPISSTISELTALQIKIADKEIA 178

Query: 182 --EDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAEEV-AEGNLTRPIK 238
             ++ Y+ +  + ++L  +A LL++L    + RS+  PI   +   + +  + +LT    
Sbjct: 179 VDKELYDSSITIFITLAGLAILLSILIGLWVKRSVMNPINDIVRNLKTIRQDSDLTVKFH 238

Query: 239 VDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEI 298
               DE G +  ++ ++ + LR  L  IA +A  + S+A EL++ T E+ + + QQ  E 
Sbjct: 239 TFNDDELGLISTSLTQVIEHLRGILHSIAEAANTVTSSATELSSFTQETNKRMQQQQAET 298

Query: 299 EQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATA 358
           EQ ATA+NEMT+ V EVA++  + + ++++A T A +G  +V +++S++ ++S  +Q TA
Sbjct: 299 EQTATAMNEMTATVAEVAQSTSAAANSAKDADTYAANGNRIVIDSISSMSQLSEQIQKTA 358

Query: 359 TLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAH 418
            +IG L+NES++IG+VLDVI+ +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA 
Sbjct: 359 QVIGFLSNESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAQ 418

Query: 419 RTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINE 478
           RTQ+ST EIE MI ++Q G + AV +M    ++ +   N A  AG +L  I  ++  I E
Sbjct: 419 RTQKSTQEIEAMIATLQQGVKQAVSAMEVGIKQVDDANNKANQAGQALKEIVASVDNIAE 478

Query: 479 RNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMVGR 538
            N  IA+AAEEQ+ VA  ++R+++ I D++  +   A + S +   L++LA  +   V  
Sbjct: 479 LNTHIATAAEEQSSVAENINRSIIAISDITDDATRSALELSESVINLTKLANSMRSQVSA 538

Query: 539 FRL 541
           FRL
Sbjct: 539 FRL 541