Pairwise Alignments

Query, 872 a.a., alanyl-tRNA synthetase from Pseudomonas simiae WCS417

Subject, 892 a.a., alanine--tRNA ligase from Methanococcus maripaludis S2

 Score =  255 bits (651), Expect = 9e-72
 Identities = 241/907 (26%), Positives = 405/907 (44%), Gaps = 158/907 (17%)

Query: 5   EIREAFLRFFEEQGHTRVASSSLIPGN-DPTLLFTNAGMNQFKDCFL-GQEKRAYTRAVS 62
           E+ + F  FF+E+GHT V  S ++       +L T A +  F+     G  K      V 
Sbjct: 63  EMVKEFTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNPLVI 122

Query: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTGVLKLPKE 122
           +Q C+R     ND++NVG T RH T F M  + +F                         
Sbjct: 123 AQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFN------------------------ 154

Query: 123 KLWVTVYASDDEAYDIWT-KEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 181
                  + DD  Y  WT K V    E M R+G +       +++W  G  G  GPC E+
Sbjct: 155 -------SKDD--YKYWTDKTVEYCFELMQRLGIDGKTITFIESWWEGG--GNAGPCYEV 203

Query: 182 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 241
              HG                  +E+   VFMQ+ +  +     +P   VDTG G+ER +
Sbjct: 204 I-THG------------------VELATLVFMQYKKIGNDY-EEIPLKIVDTGYGIERFA 243

Query: 242 AVMQHVHSNYEI----------------DLFQSLLAAAAKAIGCTN-EDQASLKV----- 279
              Q   + YE                 ++ + ++A +A   G  + E+   L+V     
Sbjct: 244 WASQGTPTVYESLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 280 -----------------------VADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRH 316
                                  +ADH R   F+  DG++PSN   GY+ R ++R+  R+
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 317 GNKLGANGSFFYQIVAALVAEMGEAFPELKQNQAHIERVLKAEEEQFAKTLEQGLKILEQ 376
             K+G + S    I++  +  M E +PEL   + +I  VL AEE+++ +T+ +G  I+E+
Sbjct: 364 MEKIGISMSI-KDIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIVER 422

Query: 377 DLANLQGSVVPGDVVFKLYDTYGFPMDLTGDIARERN--------LTLDEEGFEREMEAQ 428
             A+   S +  D + +LYD+ G P ++  D+  + N        +T+ +  +   + A+
Sbjct: 423 MAASK--SEITLDDLIELYDSNGLPPEIVKDVVDDLNKKGKKTIAITVPDNFYT--IVAE 478

Query: 429 RVRARSASSFGMDYNSLVKVDVA-TEFTGYK---ATRGAAKVVALYKEGQSVDVLNEGDD 484
           R               L +++V+ TE   +K        AKV+ + ++            
Sbjct: 479 RHEEEKPEEVVSTKKELPELEVSKTELLFFKHPTQVEFEAKVLKIVEK------------ 526

Query: 485 GVVVLDQTPFYAESGGQIGDCGFLEASSGRFDVRDTTKTGGAFLHHGVLASGSLTVGSPV 544
             VVLD+T FYAE GGQ  D G L       +V D  K  G  + H V        G  V
Sbjct: 527 -YVVLDKTLFYAEGGGQKYDIGQLND----IEVMDVQKKNG-IVFHKVSDISKFKEGDTV 580

Query: 545 EAQVDADVRHATSLNHSATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQ 604
           +  V+ D R     NH+ATH+++AA  +VLG+HV Q GS VD+++ R D +H+E I  EQ
Sbjct: 581 KGAVNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSNVDTEKGRLDITHYERISREQ 640

Query: 605 IKALEDIVNAEIRKNTAVETEETDIETAKAKGAMALF--GEKYGDSVRVLSMGGDFSVEL 662
           +K +E I N  +     V +   D   A+ K    ++  G   GD++R++ + G   VE 
Sbjct: 641 VKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIEGT-DVEA 699

Query: 663 CGGIHANRTGDIALLKIVSEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSR 722
           CGG H + T +   +K++    +  GV R+E  TG  +++ + + E+ L ++A ++    
Sbjct: 700 CGGTHCSNTSECGYIKVLKTERIQDGVERLEYSTGMGSVSEIASLEDTLIDSAEILGIPN 759

Query: 723 DNLIDKLSAVLERNRALEKQLEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKA 782
           D L   +    E  +  +K +E+LQ K       +L+    +V + +VL  ++ G   + 
Sbjct: 760 DQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFENVGNYEVLVEQVSGTPNE- 818

Query: 783 LLALVDQLKNKLGRAVILLGGVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGGG 842
           L+++ D L   +G  +I+L  ++E+  +L     +    +L   DL++       GKGGG
Sbjct: 819 LMSIADNL--AVGNKLIVL--MNENDYLL---CKRGENVELSMKDLIRNI-----GKGGG 866

Query: 843 RPDMAQG 849
           + ++AQG
Sbjct: 867 KDNLAQG 873