Pairwise Alignments

Query, 580 a.a., potassium/proton antiporter from Pseudomonas simiae WCS417

Subject, 574 a.a., sodium/hydrogen exchanger family/TrkA domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  699 bits (1804), Expect = 0.0
 Identities = 356/571 (62%), Positives = 444/571 (77%), Gaps = 2/571 (0%)

Query: 1   MNATTINSLFLIGALLVSASILVSSLSSRLGIPILVIILAVGMVAGVDG-GGIIFDNYPT 59
           M+A +INS FLIGALL + S+L+S +SSRLGIPIL+I LAVG++AG DG GGI+FD+Y T
Sbjct: 1   MDADSINSFFLIGALLTAVSVLLSPMSSRLGIPILLIFLAVGILAGEDGPGGILFDDYST 60

Query: 60  AYLVGNLALAVILLDGGLRTRVASFRVALWPALSLATVGVLITTGLTGMAAAWLFDLNLI 119
           AYLV N ALA+ILLDGG+RTRVASFRVALWPALSLAT GV ITT +TG+ AAWLFDL+ +
Sbjct: 61  AYLVSNFALAIILLDGGMRTRVASFRVALWPALSLATFGVAITTSITGVMAAWLFDLHWL 120

Query: 120 QGLLIGAIVGSTDAAAVFSLLGGKGLNERVTASLEIESGSNDPMAVFLTVTLIDMLASGQ 179
           QGLL+GAIVGSTDAAAVFSLL G+ LNERV A+LEIESGSNDPMAVFLTVTLI +LA+  
Sbjct: 121 QGLLVGAIVGSTDAAAVFSLLKGRSLNERVGATLEIESGSNDPMAVFLTVTLIAILANVG 180

Query: 180 TGLHWS-LLTHLVREFGIGGVVGLGGGWLMLQMVNRINLATGLYPILVIAGGLFVFAVTN 238
             L  S +L   +++FG+G ++GLGGGWL+ ++VN   LA GLY ILV++GGL ++A +N
Sbjct: 181 AELSASFMLISFIKQFGLGVLLGLGGGWLLWKLVNVSKLAEGLYSILVLSGGLMIYATSN 240

Query: 239 ALHGSGFLAVYLCGLVIGNRPVRSRHGILHMLDGMAWLAQIGMFLVLGLLVTPHDLLPIA 298
            L GSG L++YL GL +GN+P R RH IL++LDGM W++QIGMFLVLGLL+TP DLL I 
Sbjct: 241 KLGGSGILSIYLVGLFLGNKPTRGRHAILNVLDGMTWVSQIGMFLVLGLLLTPSDLLDIW 300

Query: 299 LPALGLALWMILFARPLSVMVGLLPFKAFHGREKAFIAWVGLRGAVPIILAVFPLMAGLP 358
           LP L LA  MILFARPL+V + LLPFK+F  R++ FI+WVGLRGAVPIILAVFP+MAGLP
Sbjct: 301 LPGLALAFGMILFARPLAVWLSLLPFKSFGSRDRWFISWVGLRGAVPIILAVFPMMAGLP 360

Query: 359 HAQLYFNLAFFIVLVSLLVQGTSLPWVAKLLKVTVPPDPAPISRAALEVHVTSEWELFVY 418
            AQLYFNLAFF+V+VSLLVQG SL   A+L KV +PP P PISR+ +E++  SEWE+FVY
Sbjct: 361 GAQLYFNLAFFVVIVSLLVQGASLTTAARLAKVELPPKPLPISRSGVEIYPKSEWEVFVY 420

Query: 419 RLGAEKWCIGAALRELKMPEGTRIAALFRGQQLLHPSGSTVLEVGDLLCVIGHEHNLPAL 478
            L   KWCIG  L+ L MP+GTRIAA+FR   LLHPSGST LE GD+LCV+G E +L AL
Sbjct: 421 CLSESKWCIGEPLKRLAMPDGTRIAAVFRNNTLLHPSGSTCLEAGDILCVLGQEKSLEAL 480

Query: 479 GKLFSQAPQRGLDLRFFGDFVLEGDAQLGAVSALYGLKLEGIDPDMPLSSFITQKVGGAP 538
             LFSQAP+     RFFGDF ++ + +L  ++ +YGL L+     M ++  +  ++G  P
Sbjct: 481 SNLFSQAPETDEVSRFFGDFFIDTEVKLADLAPIYGLTLDDETGAMTVADLVALELGAHP 540

Query: 539 IVGDQVEWNNTIWTVAVMDGNKIGKVGVRFP 569
           ++GDQ  W +  W VA +   K+  VG+R P
Sbjct: 541 VLGDQFLWQSLHWVVAGLYEGKVTNVGIRLP 571