Pairwise Alignments

Query, 310 a.a., chemotaxis protein CheW from Pseudomonas simiae WCS417

Subject, 308 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

 Score =  341 bits (875), Expect = 1e-98
 Identities = 176/303 (58%), Positives = 226/303 (74%), Gaps = 4/303 (1%)

Query: 1   MAGVMDSVNQRTQLVGQNRLELLLFRLDGKQLYGINVFKVREVLQCPKLTIMPKSSPVVC 60
           M G++DSVNQRTQLVGQNRLELL FRL+G+Q YGINVFKV+EVLQCPKLT MP    +V 
Sbjct: 1   MTGILDSVNQRTQLVGQNRLELLTFRLNGRQRYGINVFKVKEVLQCPKLTSMPNLHRLVK 60

Query: 61  GVANIRGATIPILDLALATGSAGLQDRESPFVIITEYNTKTQGFLVRSVERIVNMNWEEI 120
           GVA+IRG T+ ++D++LA G     D +  FV+I E+N   Q FLV SVERI+NM WE I
Sbjct: 61  GVAHIRGQTVSVIDMSLAVGGRPTTDVDKSFVVIAEFNRTIQAFLVSSVERIINMRWEAI 120

Query: 121 HPPPKGTGRDHYLTAVTRVDNQLVEIIDVEKILAEVAPTSETI--SVGVVDAET-AHKAV 177
            PPP GTG+ +YLTAVT +DN+LVEIIDVEKILAE+ P +E +  S+G   A+    K  
Sbjct: 121 LPPPNGTGKSNYLTAVTNIDNELVEIIDVEKILAEITPVNEDMDSSIGEQIAQVEQEKEF 180

Query: 178 SLRVLTVDDSSVARKQVTRCLQTVGVEVVALNDGRQALDYLRKLVDDGKKPEEEFLMMIS 237
             R+L  DDSSVARKQV R ++++G EVV   DG+ A + L +++ +G     +  ++IS
Sbjct: 181 VRRILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEG-PISNQISLVIS 239

Query: 238 DIEMPEMDGYTLTAEIRNDPRMQKLHIILHTSLSGVFNQAMVKKVGADDFLAKFRPDDLA 297
           DIEMPEMDGYTLTAEIR    ++ L++ILH+SLSGVFNQAMV++VGA+ F+AKF PD+L 
Sbjct: 240 DIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERVGANAFIAKFNPDELG 299

Query: 298 SRV 300
           + V
Sbjct: 300 NAV 302