Pairwise Alignments

Query, 448 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 442 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (384), Expect = 2e-41
 Identities = 128/433 (29%), Positives = 216/433 (49%), Gaps = 18/433 (4%)

Query: 4   SLRVRLMLAAATLAVLFMLGLLPAMQGAFSLALQDSIEQRLASDVTTLISAARVENNRL- 62
           S+R +L L    L VL  +  L   +     A  DSI  RL  D+  ++ A    N  + 
Sbjct: 3   SIRTKLSLWLTGLLVLGTVIGLILFESMLRQAFHDSIINRLEEDLEHIMLATHFNNGEIH 62

Query: 63  LMPAQLPDERFNLTDSRLLGYIYDREGHLVWRSRATKEENINYKPRYDGRGNEFARIREA 122
           +  +QL          R        E   V RSR+  +  ++ +P    +     R+ +A
Sbjct: 63  IDQSQLSSFYRPAYSGRYFQLNLPNE---VIRSRSLWDMQLDIEPLAPSQ----TRVWQA 115

Query: 123 NGQEFFVYDVEVRLLGGKSAAFSIVALQPVREYQLTLEGLRENLY---LGFGAALLV-LL 178
            G +    D+++  LG  S++ ++ A   V +       +   +Y   LG   A+LV ++
Sbjct: 116 KGPKN--NDMQLLSLGLNSSSANVTATLTVAQDLSIGRRVFSEVYGTKLGVNLAMLVAMI 173

Query: 179 TLLWLGLTWGLQALRRLSQELDQIEGGTRESLSEQH-PRELLRLTGSLNRLLHSEREQRA 237
             ++L L    + ++++   L +++ G  ++L   + P E+  L  + N LL    +Q  
Sbjct: 174 AGIFLILRQSFKPVKQIQHALSRLQEGEIKALELNNIPPEVQPLAKTYNELLEYTAKQIE 233

Query: 238 RYRDSLDDLAHSLKTPLAVLQGVSEDMAQRPEDRDQAWVLQSQIERMSQQISYQLQRASL 297
           R R++L +L+H LKTPLAV+Q   E +  +  D + A  LQ Q++ + + +  +L  A +
Sbjct: 234 RSRNNLGNLSHGLKTPLAVMQQQVEALGLK--DPETAMALQQQLDAIHKMVERKLAAARI 291

Query: 298 RKSGLVRHQVRLEPVLQSLCDTLDKVYRDKRVTVSFEL-PEECDVPIEKGALLELLGNLL 356
               L   Q+ +   L SL +TL+KV+R K ++ +FEL P    +PI +   +ELLGNLL
Sbjct: 292 TGDMLPAAQLVVPRDLHSLANTLNKVHRSKNISCNFELDPSIQRLPIHREDGMELLGNLL 351

Query: 357 ENAYRLCLSEVRISFAENLEGSELCIEDDGPGVPPDQRARILQRGERLDRQHPGQGIGLA 416
           +NA++   S+V +   +      L I+DDGPGV  D+  ++ QRG RLD    G G+GL+
Sbjct: 352 DNAFKWADSQVTVKLWKAQNKLYLSIDDDGPGVADDELDKLTQRGTRLDESVMGHGLGLS 411

Query: 417 VVKDIIESYGARL 429
           +VK+I E YG  L
Sbjct: 412 IVKEIAEQYGIEL 424