Pairwise Alignments

Query, 487 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 484 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  447 bits (1150), Expect = e-130
 Identities = 245/479 (51%), Positives = 312/479 (65%), Gaps = 19/479 (3%)

Query: 20  FSTHVLPEPLDAPRLVVASTAAMALLDLDPAVAETPVFAELFGGHTLWAEAEPRAMVYSG 79
           F + V P+ +  P  +  S  A AL+ L     E     +   G+     A   A VYSG
Sbjct: 14  FYSQVYPQGISNPHWLAWSDDAAALIGLHQPTDE---LLQGLSGNAAVEGASYYAQVYSG 70

Query: 80  HQFGGYTPQLGDGRGLLLGEAYNEAGEHWDLHLKGAGMTPYSRMGDGRAVLRSSIREFLA 139
           HQFGGYTP+LGDGR ++LGEA    G  WD+ LKG G TPYSR GDGRAV+RS++REFL 
Sbjct: 71  HQFGGYTPRLGDGRSIILGEAIGPNGA-WDVALKGGGPTPYSRHGDGRAVMRSAVREFLV 129

Query: 140 SEALHALGIPSSRALCVIGSDTPVWREKQERGAMVLRMAHSHIRFGHFEYFYYTKKPEQQ 199
           SEALH LG+P++RAL VIGSD PVWRE QE  A+ +R+A SHIRFGHFE+F ++++ +  
Sbjct: 130 SEALHHLGVPTTRALAVIGSDMPVWRESQETAAITVRLARSHIRFGHFEFFSHSERGQAD 189

Query: 200 AL--LAEHVLNLHYPECREQPEPYLAMFREIVERNAELIAKWQAYGFCHGVMNTDNMSIL 257
            L  L    L  HYP     P  Y A F ++V+ +A++IA WQA GF HGVMNTDNMSIL
Sbjct: 190 KLTQLLNFTLKQHYPHLSCDPAGYKAWFLQVVQDSAKMIAHWQAIGFAHGVMNTDNMSIL 249

Query: 258 GITFDFGPFAFLDDFDAHFICNHSDHEGRYSFSNQVPIGQWNLSALAQALTPFISVDALK 317
           G +FDFGPFAFLD F   FICNHSD +GRY+F  Q  IG WNL  LAQALTP I+ D L 
Sbjct: 250 GDSFDFGPFAFLDTFQEDFICNHSDPDGRYAFGQQPGIGLWNLQRLAQALTPVIASDDLI 309

Query: 318 EALGLYLPLYQANYLDLMRRRLGL-----TTAEDDDQ--KLVERLLQLMQNSGVDYTLFF 370
            AL  Y      +YL LMR +LGL     ++AE D Q  +L+ R   LM+ + +DY+  +
Sbjct: 310 AALNQYQHALVQHYLALMRAKLGLVQQADSSAEQDQQDLELIGRFTVLMEKNQLDYSHTW 369

Query: 371 RRLGDESAALAVTRLRDDFVDLAGFDAWAEQYKARV--VRDGEYSQEQRRERMHAVNPLY 428
           RR G    +   + LRDDF+DL  FDAW + Y+AR+  V D E  Q+Q     + VNP Y
Sbjct: 370 RRFGQLDPSSLHSSLRDDFIDLNEFDAWYQVYQARLGKVTDVEAWQQQ----CNRVNPKY 425

Query: 429 ILRNYLAQNAITAAESGDYSEVRRLHEVLSKPFEEQAGMEQYAQRPPDWGKHLEISCSS 487
           ILRNYLAQ AI A + G+ ++++RLH+VL +PF EQ   E+ A+RPPDWG+ L +SCSS
Sbjct: 426 ILRNYLAQEAIIAVDEGNLAQLQRLHQVLRQPFTEQIEHEELAKRPPDWGQGLIMSCSS 484