Pairwise Alignments

Query, 332 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 355 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  187 bits (476), Expect = 3e-52
 Identities = 114/321 (35%), Positives = 176/321 (54%), Gaps = 6/321 (1%)

Query: 11  ARAALG--GARRAGYDYSGLLQQVGITPELLTEPRARIAPEQFTRLLQMLWLALDDEYLG 68
           A A LG  G R +G     LL+++G+ P  L +P  R+    +++L   L    DDE+ G
Sbjct: 29  AEALLGFVGPRLSG---EHLLEKIGLDPACLQDPDGRMDVRDYSQLWLRLARHFDDEFFG 85

Query: 69  FADGPSKRGTFAMMCHALIHCRTLEKALERGLLFYSLFPQGPRWQLTREGEMARLSLDDS 128
                 + G+F  +  + +   TLEKAL   L F  L  +  R +L R   +A + L + 
Sbjct: 86  MDPRRLRSGSFVFLSRSCLQQPTLEKALVHALEFLGLGLENLRGKLIRSQSLAEVVLRER 145

Query: 129 QLWDPEHFLSECLLVIWHRLGSWLIGQRIRLHQATFSYPQPAHASEYDLLFPCAQVFGAP 188
                  F      ++ H L  WL+G+RI L        +P +  +Y ++F     FG P
Sbjct: 146 NAEPARAFCYFTFWMLLHGLACWLVGRRIPLLAVELRCAEPDYTDDYRVMFSDNLRFGRP 205

Query: 189 NSSLVFPARYLNLPLLQDERTLKHFLERSPADLLSRPDEGDSLSSQLRR-LLSRDRSPWP 247
           ++ ++F A  L+LP+ + E  L+ FL  +PA++L R  +  SL+S++++ L S     WP
Sbjct: 206 STRIIFAAEVLDLPIRRSEAELRAFLAEAPANILVRYRDHSSLASRIKQHLRSLPAERWP 265

Query: 248 DLEAVAQHLHISPQTLRRHLREEGTSFQALKDELRRDIAIYHLGRADLSLQEIAEQLGFS 307
           D E +AQ L IS  TLRR L E G  +QA+KD LR+++A   L  A +S  EIAE+LGF+
Sbjct: 266 DSETLAQTLCISASTLRRRLAEAGQPYQAIKDGLRQEMATEWLADAAISYGEIAERLGFA 325

Query: 308 EPSAFHRAFKKWTGLTPGAYR 328
           + S+F++AF+KWTG+ PG YR
Sbjct: 326 DVSSFYKAFRKWTGINPGHYR 346