Pairwise Alignments

Query, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas simiae WCS417

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 15  ELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCSRYLGNDRDADDVCQEVMLKVLY 74
           +L+D+ L+ R         +A+  L+ RYQ  + N+ SRY+ N  D  DV QE  +K   
Sbjct: 4   QLTDQVLIERVQNG---DKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60

Query: 75  GLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRL--MDALSLDPLEEASEEKAPAPEE 132
            +  F G+S F TWLY I  N        + R+     +DA   +  E     K  +  E
Sbjct: 61  AIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPE 120

Query: 133 KGGLDRWL--VYVNPID------REILVLRFVAELEFQEIADIMHMGLSATKMRYKRALD 184
              L + L     + ID      +  + LR +  L ++EIA++M   +   + R  RA +
Sbjct: 121 NITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRARE 180

Query: 185 KLREK 189
            + +K
Sbjct: 181 AVEKK 185