Pairwise Alignments

Query, 1162 a.a., chromosome segregation protein SMC from Pseudomonas simiae WCS417

Subject, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

 Score = 63.9 bits (154), Expect = 6e-14
 Identities = 66/296 (22%), Positives = 135/296 (45%), Gaps = 35/296 (11%)

Query: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60
           M +K IK+  F+S  + T++NF   + +++G NG GKS+I  A+ + +      N R E+
Sbjct: 1   MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIEN 59

Query: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLIGEYAAYAEISIRRKVTRDSQNSYFLNGT 120
           +          ++  +  S+EL F+    T + +         R++    + +  ++NG 
Sbjct: 60  L---------MQQGAASFSVELEFEMMGNTYLVK---------RKRFQHKTDDKLYVNG- 100

Query: 121 KCRRRDITDI------FLGTGLGPRSYSI-IEQGMISKLIEAKPEDLRNFIEEAAGISKY 173
           K      ++I       L       S +I I+QG I+ LI+  P D +  I +  GI KY
Sbjct: 101 KLNAESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKY 160

Query: 174 KERRRETENRIRRTHENLARLTDLREELERQ---LERLHRQAQAAEKYQEYKGEERQLKA 230
            E+  E  N +++++E    L  L  EL ++   LE L +      + +  K E  +   
Sbjct: 161 -EKASEKMNIVKKSYEE--TLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYE 217

Query: 231 QLSALRWQALNDQVGQREAIIGTQEI--SFEALVAEQRNADASIERLRDGHHDLSE 284
            L  L+ +  ++ +   E      ++  + + +++E +N +  I+  ++  + ++E
Sbjct: 218 NLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAE 273



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 92/516 (17%), Positives = 199/516 (38%), Gaps = 51/516 (9%)

Query: 660  IAEREEREATLESLETELQTLRA--TQRQQETGREHLRRLLQDEARQQGELKAQLSASKA 717
            I+E +  +A LE  +      ++  T+ +++   E     +Q+E      LK QL     
Sbjct: 480  ISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEKYNSEIQNEQLSTESLKKQLEIILN 539

Query: 718  KVEQLTLRRTRLDEEVAEMGEQRALEHE--QIGEARLHLQEALDSMALDTEQRELLLAQR 775
            K E++ ++   +D    + GE +  ++   ++ E+ +   E L+ +     +   L  + 
Sbjct: 540  KKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLNELTGKINEYSSLNDEI 599

Query: 776  DSLRERLDRVRQEARQ---------HKDHAHQLAVRLGSLKAQHASTAQALERLEMQSER 826
              +  +L  +  + +            D +  L  +L   K      +  +E  +   E 
Sbjct: 600  SLIENKLKNLENDYKNCNYSSQFLTKNDESEFLTKKLELSKIIGDYDSSKIENEKKSLEN 659

Query: 827  LTEKREQLSLNLEEGEAPLEELRLKLEELLDKRMTVDEELKTAQIALEDADRELRDAEKR 886
            L ++ +    NLE  E  L++    ++  +  ++ + E     +    D + +L + ++ 
Sbjct: 660  LKDELKNTIYNLER-EINLKKELKNIQNDISSKIGIVECYVKWETEKSDFENKLSECKEN 718

Query: 887  RTQAEQQSQLIRGQLEQQRMEWQALT-------VRRKTLQDQLLEDGYDLHGVLNTLT-- 937
              +  +   +++   +   +E   L          ++   ++LLE   ++   + T+   
Sbjct: 719  YEKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYN 778

Query: 938  --AQANEKEAEEE-----------LERIAARIQRLGAINLAAIDEYQQQSERKRYLDAQD 984
                 N K   E            LERI++ + +L   N++ ++E  Q    K+    + 
Sbjct: 779  PELHENAKRLYENILNEFNDILRTLERISSEL-KLKNENISYLNEKIQNLSNKKEEKKKI 837

Query: 985  ADLVEALDTLENVIRKIDKETRNRFKDTFDQINSGLQALFPKVFGGGSAYLELTGEDLLD 1044
             +  E LD ++  I   D   +   +     I      +F + F    ++++L      D
Sbjct: 838  EEFKEYLDKIKREIFSKDGFQKYLREKYIPLIQRHTNQIFQE-FELPYSHIQLKD----D 892

Query: 1045 TGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKL--NPAPFCMLDEVDAPLDDAN 1102
              + +   P       +  LSGGE+   +LAL   I K   N     +LDE  A LD+  
Sbjct: 893  YSLIVDGLP-------VETLSGGEQIAVSLALRLGISKAVCNNIECIILDEPTAYLDEDR 945

Query: 1103 VGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGV 1138
                  + K +    Q   ITH++   ++AD ++ V
Sbjct: 946  RKNLLNIFKNIKTINQMAIITHHQELEQIADNIVKV 981



 Score = 40.4 bits (93), Expect = 7e-07
 Identities = 70/334 (20%), Positives = 148/334 (44%), Gaps = 55/334 (16%)

Query: 652 RGQEIVNLIAEREEREATLESLETELQTLRATQRQQETGREHLRRLLQDEARQQGELKAQ 711
           +  E +N++  ++  E TL  LE EL        Q+    E+L +L ++E  +   LK +
Sbjct: 162 KASEKMNIV--KKSYEETLLKLEGELT-------QEPEILENLEKL-KNEVSESEILKEE 211

Query: 712 LSASKAKVEQLTLRRT----RLDEEVAEMGEQRALEHEQIGEAR---LHLQEALDSMALD 764
           +      +E+L L +     +++E+ AE  + +    + I E +   L +Q   +S+ L 
Sbjct: 212 ILKKYENLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLV 271

Query: 765 TEQRELLLAQRDSLRERLD------RVRQEARQHKDHAH--------------QLAVRLG 804
            E+ + +    ++ ++ L+       +  +   HK +                +L V   
Sbjct: 272 AEESKNISENEENYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKE 331

Query: 805 SLKAQHASTAQALERLEMQSERLT--EKREQLSLNLEEGEAPLEELRLK---LEELLDKR 859
           SLK    +  +  E L+   E++   +K ++    LE  E  + E+++    +E L D  
Sbjct: 332 SLKDNKKNPDELKENLKENDEKILILDKIKEKIKELEFIEKQIYEIKIHKKTVETLFDSV 391

Query: 860 MTVD------EELKTAQIALEDADRELRDAEKR-RTQAEQQSQLIRGQLEQQRMEWQALT 912
              D      EELKT + + E+  +E  D EK+ + + +++++LI    + +++E     
Sbjct: 392 KIYDDSIKTFEELKTKKNSYENLLKEKFDLEKKLQNETDEKTKLISELTDFEKIE----- 446

Query: 913 VRRKTLQDQLLEDGYDLHGVLNTLTAQANEKEAE 946
             +  L+++L E   DL   ++ L     +KE++
Sbjct: 447 -EKINLENELKEKYEDLSEKIDKLNEIVLKKESK 479