Pairwise Alignments

Query, 684 a.a., DNA polymerase III subunit gamma/tau from Pseudomonas simiae WCS417

Subject, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

 Score =  499 bits (1286), Expect = e-145
 Identities = 308/712 (43%), Positives = 397/712 (55%), Gaps = 56/712 (7%)

Query: 1   MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK 60
           MSY  LARKWRP  F E+VGQ+HVL AL NAL   RLHHAYLF+GTRGVGKTTI R+ AK
Sbjct: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60

Query: 61  CLNCETGITSTPCGTCSVCKEIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF 120
            LNCETGIT+TPCG C+ C+EID+GRFVDL+EIDAASRTKVEDTRELLDNVQY P+RGRF
Sbjct: 61  GLNCETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF 120

Query: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP 180
           KVYLIDEVHMLS HSFNALLKTLEEPP YVKF+LATTDPQKLP TILSRCLQF LK ++ 
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV 180

Query: 181 ERVVEHLTHVLGVENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM 240
           E + + L  VL  E +  +  AL LL  AADGSMRDA+SLTDQAIA G G V +  V  M
Sbjct: 181 ENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHM 240

Query: 241 LGTLDHGQVFDVLHALIEGDAKALLEAVRHLSEQGPDWNGVLSEILNVLHRVAIAQALPE 300
           LGTLD      +L A+     +A+++ +  L++ G +W+G+L ++   LHR+A+ QALP 
Sbjct: 241 LGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPA 300

Query: 301 GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP 360
            +D    +  R+ +LA+ L  +DVQ YYQ+ L GR+DLPL+P  R G EM++LRM+AFRP
Sbjct: 301 TLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAFRP 360

Query: 361 ADSADAPRQPLKPVGISQATVDSAKPVAGAAVVAPVVAAPAP--VAPVPEPEPVVAAPVV 418
                           S  ++ S       AV AP +AAP     A  P+P+PV  + V 
Sbjct: 361 ----------------SHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVS 404

Query: 419 E------PEPVVEP----EPVVDLPWNDPVDAEVEAEQVPAVEPVLDTTGEQPELTPMP- 467
           +      P PV  P    +PVV+     PV     +  + A E  + T  +      MP 
Sbjct: 405 QSASQAMPHPVAPPMMAAQPVVESA--VPVTQREASHSINAPEASVVTNTDTQSQASMPA 462

Query: 468 ----------------TPTPDSVVPDAPEWVSAPVPE---PTVAQVEAATPGIDLDDEPP 508
                               D    DA     A   E       QV+ +    D D+  P
Sbjct: 463 LAGLRHQLRSKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEP 522

Query: 509 LDEDY----IEPDMDSAYSYLDDLASEHTAEPAPEPEAEPAAAPATGLALQWLELFPKLP 564
            +E Y    ++P   +  S +     +   E    PE              W  L  +L 
Sbjct: 523 EEEIYQWRPMQPIEVAVKSEVTPTQLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLE 582

Query: 565 ISGMTGSIAANCTLISIDGDHWLLHLDPAHSALFNATQQRRLNDALNQYHERTLSITIEL 624
            + M   +A N   +   GD   L L P+H+ L N   Q+ L  ALN       S+ I  
Sbjct: 583 TAKMVEQLALNSAFVR-QGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNI-T 640

Query: 625 IKPEQETPAQAATRRRINRQREAEDSIHGDPLIQQMMQQFGAVVRHDTIEPV 676
           +  E ETP +   R    +   A  S+  DP +Q + ++F A +  D++ P+
Sbjct: 641 VGQEGETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRPI 692