Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  213 bits (543), Expect = 1e-59
 Identities = 143/362 (39%), Positives = 207/362 (57%), Gaps = 18/362 (4%)

Query: 162 LSFMIGASLNSHWGFALAAGLSVPLGLLGLSWQQ--RGLKRLLRLAEQTTSDPLIAQMYT 219
           L+ +  A++    G  LA  +++P+  +   +    RG   L +  E   +D  IAQ+  
Sbjct: 295 LTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDE-IAQLSK 353

Query: 220 DSRGAQARLEMSI--LSQEARLKTCLTRLQDTAEHLNDQAAQSNTLAHNSSSGLERQRVE 277
              G   ++  SI  ++Q +R       LQ  AE ++ +A     + H++S   ++QR +
Sbjct: 354 GFNGFIEKIHQSIKDVAQTSR------ELQVAAEGVSRKAL----VTHDNS---QQQRDQ 400

Query: 278 TEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIQRLSVAVGET 337
           T QV TA+NQM AT  E+AS+    A+   +A+    +GR++  + +EAI RL+  +  T
Sbjct: 401 TIQVVTAINQMGATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENT 460

Query: 338 GVTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLA 397
           G  V QLA  + EIG ++D I+GI++QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA
Sbjct: 461 GKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLA 520

Query: 398 QRTAESTGQIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHIT 457
            RTA ST +I  +I +LQ  A  AV  MDAG     +GVA   EA Q L+ IS+ +  I+
Sbjct: 521 SRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDIS 580

Query: 458 DMTTQIAAATEEQSSVAEEISRNISTIALLADQTSEQAMNSAQLSEELTHTANTQYSLVE 517
           D  TQ+A ATEEQS+V   I++NI  I  + + T+  A   A  S+ L   +     LV 
Sbjct: 581 DRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVG 640

Query: 518 RF 519
            F
Sbjct: 641 NF 642



 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 21/223 (9%)

Query: 310 NRLTGRGRDIAGETREAIQRLSVAVGETGVTVTQLAKDSDEIGGVVDVIKGIADQTNLLA 369
           N++  R  D+     +  QR+ V   +    + QL+K  +  G +  + + I D   +  
Sbjct: 320 NQIAKRFTDLGRGDGDLSQRIEVKGNDE---IAQLSKGFN--GFIEKIHQSIKD---VAQ 371

Query: 370 LNAAIEAARAGEMGRGFAVVADEVRQLAQRTAE---STGQIHALIAKLQQTAAAAVQTMD 426
            +  ++ A  G + R   V  D  +Q   +T +   +  Q+ A I+++   AA A +T +
Sbjct: 372 TSRELQVAAEG-VSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETAN 430

Query: 427 AGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSVAEEISRNIS---- 482
                A++G   V +A +A+  ++  + +   +  Q+A+ T+E  S+ + I R IS    
Sbjct: 431 QASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAI-RGISEQTN 489

Query: 483 ----TIALLADQTSEQAMNSAQLSEELTHTANTQYSLVERFNR 521
                 A+ A +  +Q    A +++E+ + A+   S  E   +
Sbjct: 490 LLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQK 532