Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 636 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  224 bits (570), Expect = 1e-62
 Identities = 123/294 (41%), Positives = 183/294 (62%)

Query: 226 ARLEMSILSQEARLKTCLTRLQDTAEHLNDQAAQSNTLAHNSSSGLERQRVETEQVATAV 285
           A+L     S  ++++  +  +  T+E L   A   +  A  +    + Q+  T QV TA+
Sbjct: 341 AQLASGFNSFISKIQDSVIEVAQTSEQLGKSAIDVSRQAQQTLEDSQDQKDRTMQVVTAI 400

Query: 286 NQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIQRLSVAVGETGVTVTQLA 345
           N+M AT  E+A++  + A+A ++A+R +G G+ +  + R+ I +LS  V + G  +  LA
Sbjct: 401 NEMGATVNEIAANAAQAAEAAKDADRASGSGQKVVTQARDTINQLSKDVSQVGEVIESLA 460

Query: 346 KDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTG 405
             +  IG ++DVI+ I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTA ST 
Sbjct: 461 THTKSIGSILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTD 520

Query: 406 QIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAA 465
           ++  +I KLQ  +A AV  M     +++EGV+ V EA   L GIS+ +  I+DM  Q+AA
Sbjct: 521 EVQVMIDKLQSESARAVNAMSQSRSRSQEGVSAVDEASNTLSGISDQIGLISDMNIQVAA 580

Query: 466 ATEEQSSVAEEISRNISTIALLADQTSEQAMNSAQLSEELTHTANTQYSLVERF 519
           ATEEQS+V E+I+RN++ I  +  +T+  A  +A+ S++L   A     LV RF
Sbjct: 581 ATEEQSTVVEDINRNVTEINDITQRTAATAQAAARASKDLNALATRLDQLVARF 634



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 15/110 (13%)

Query: 391 DEVRQLAQRTAESTGQIHALIAKLQQTAAAAVQTMDAGHRQAEEGVARVMEADQALVGIS 450
           DE+ QLA          ++ I+K+Q +     QT +   + A + V+R  +A Q L    
Sbjct: 338 DELAQLA-------SGFNSFISKIQDSVIEVAQTSEQLGKSAID-VSR--QAQQTL---- 383

Query: 451 EAVAHITDMTTQIAAATEEQSSVAEEISRNISTIALLADQTSEQAMNSAQ 500
           E      D T Q+  A  E  +   EI+ N +  A  A + +++A  S Q
Sbjct: 384 EDSQDQKDRTMQVVTAINEMGATVNEIAANAAQAAEAA-KDADRASGSGQ 432