Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (742), Expect = 9e-83
 Identities = 171/503 (33%), Positives = 263/503 (52%), Gaps = 7/503 (1%)

Query: 17  QQRLISTTDAKGVITYCNDAFVEISGFSRDELVRAPHNLVRHPDVPPAVFAHMWSTLKQG 76
           Q  LISTT+ +G+ITY N  F E+SG+S DEL+  PHN VRHPD+P A F  MW  LK G
Sbjct: 24  QDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDMPSAAFKEMWEKLKSG 83

Query: 77  LPWMGIVKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTAEQIRRAEALYHRINQG 136
             W GIVKNRCK GD YWV+A+V+P+FE   +VGY+SVR++P A  + +A A+Y R+   
Sbjct: 84  QSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAAYVSKATAIYRRLLHN 143

Query: 137 KSAIPQRDKWLPVLQDWLPFILVSQLSFMIGASLNSHWGFALAAGLSVPLGLLGLSWQQR 196
           K  IP   K L ++Q      +V+    +I       WG+ +    ++ +GL    +   
Sbjct: 144 K-PIP---KPLSLMQKRAVSAVVASTGLLIAGYF---WGWGVIIAGAILMGLNLAIFYDE 196

Query: 197 GLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARLKTCLTRLQDTAEHLNDQ 256
             +   +L +  T    I++         + L+  ++  +A++   L R QD A  L+  
Sbjct: 197 AFRIPAKLIDMQTKYDSISRYIYAGADTSSILDFQLILLQAKMNGVLGRTQDQANQLHAI 256

Query: 257 AAQSNTLAHNSSSGLERQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRG 316
           A Q       + + L++++ + EQ+A+A+ +M++T  EVA + QRT+ +   A  L  + 
Sbjct: 257 ADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQRTSTSINTAYELCLKS 316

Query: 317 RDIAGETREAIQRLSVAVGETGVTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEA 376
                   + +++L+ +V +       L ++++ +   +  I  IA+QTNLLALNAAIEA
Sbjct: 317 SANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDSIAEQTNLLALNAAIEA 376

Query: 377 ARAGEMGRGFAVVADEVRQLAQRTAESTGQIHALIAKLQQTAAAAVQTMDAGHRQAEEGV 436
           ARAGE GRGFAVVADEVR L+ RT  ST  I   + K+     A  + M+   + AE   
Sbjct: 377 ARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKEMEQSRQHAERCA 436

Query: 437 ARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSVAEEISRNISTIALLADQTSEQAM 496
             +  + + +  I + V+ I     Q A A ++Q  V  EI+ NI  I   + +      
Sbjct: 437 NDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHFITQSSSENLAATH 496

Query: 497 NSAQLSEELTHTANTQYSLVERF 519
                +  L H A     L   F
Sbjct: 497 QIGDAANHLKHNAEKALGLRRAF 519