Pairwise Alignments

Query, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 524 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  347 bits (891), Expect = e-100
 Identities = 206/520 (39%), Positives = 306/520 (58%), Gaps = 4/520 (0%)

Query: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVEISGFSRDELVRAPHNLVRHPD 60
           MR   PVTQRE  +PA   L+STTD +  ITY N +F  ++G++ ++++   HN+VRHP 
Sbjct: 1   MRKKLPVTQREYDYPADWILLSTTDTQSHITYANQSFCMVAGYTLNDMLGQTHNMVRHPY 60

Query: 61  VPPAVFAHMWSTLKQGLPWMGIVKNRCKTGDHYWVNAYVTPVFEGNQVVGYESVRIKPTA 120
           +PP  F  +W T+++G PW GIVKNRC  GDHYWV+AYV+P+    QV  ++SVR KP+ 
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIMINGQVAEFQSVRTKPSR 120

Query: 121 EQIRRAEALYHRINQGKSAIPQRDKWLPVLQDWLPFI-LVSQLSFMIGASLNSHWGFALA 179
           EQI+RA++ Y  +N  KS      K +  +   L  + LV+ L  +  A      GF +A
Sbjct: 121 EQIQRADSAYAELN--KSGHVNALKRILDMPTKLALLGLVALLPMLYLALQMGAMGF-VA 177

Query: 180 AGLSVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGAQARLEMSILSQEARL 239
             +SV +  +G +      + L+  A++   +PL+A +YT        +E+++  Q + L
Sbjct: 178 LAISVLVLFIGGNLILGRYRALVAKAKKIYDNPLMAYIYTGQSDDLGAIELALQMQNSEL 237

Query: 240 KTCLTRLQDTAEHLNDQAAQSNTLAHNSSSGLERQRVETEQVATAVNQMAATTQEVASHV 299
           K+ L R +D+ + +  +A  S        S  + Q  E EQVATA+ QM AT  +++S+ 
Sbjct: 238 KSVLGRARDSCDKVTQEAKVSAAKGEEIQSTSQSQLAEIEQVATAMQQMTATLVDMSSNC 297

Query: 300 QRTADATQEANRLTGRGRDIAGETREAIQRLSVAVGETGVTVTQLAKDSDEIGGVVDVIK 359
              A A+Q A+  T  G      T  +IQ ++  +  T   +T+L   S +IG V+DVI+
Sbjct: 298 ADAASASQMASEQTINGDKTVVSTIHSIQTMAQQLHATSKVITELEGHSKDIGRVLDVIQ 357

Query: 360 GIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHALIAKLQQTAA 419
           GIA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA+RT ++T +IH++I  LQ    
Sbjct: 358 GIAEQTNLLALNAAIEAARAGELGRGFAVVADEVRALAKRTHDATKEIHSMINLLQLGTN 417

Query: 420 AAVQTMDAGHRQAEEGVARVMEADQALVGISEAVAHITDMTTQIAAATEEQSSVAEEISR 479
            AV++M  G   A E +     A  AL  I EA+A ITDM   IA+A EEQSSVA E++R
Sbjct: 418 KAVRSMHEGVEAASECITTADLAGAALRTIREAIATITDMNHHIASAVEEQSSVANEMNR 477

Query: 480 NISTIALLADQTSEQAMNSAQLSEELTHTANTQYSLVERF 519
           ++  ++     + +       L++E+    ++   LV +F
Sbjct: 478 SVVNVSQFTHSSHQLGCEMVGLNDEVISEMDSHTVLVGQF 517